Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01281 ATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGTGAGCCAGAAGACTTATCACCTGGAACTGATATGGATACAGACGATGATGATTATTCTGAGCCAGTCAACATTCATGATCTAGGGGAAACATTTTTAAAAGATTTCTGTAAGAAGTCATCAATGGCATTTTTTAATGAGTACGGCCTTATCAGTCACCAACTCAACTCGTACAACGACTTCATAAAAAGTGGCATTCAGAAGTCCTTTGATTACTTTGGTGAGATCGTAGTTCAGCCAGGATATGACCCCTCAAAGAAAGGAGATGGAGAATGGAGATATGCTTCAGTGAAGTTTGGCAAGGTAACTCTTGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCACGCTCGACTACAGAACATGACCTATTCCTCAAGGATGAAAATGAATATTAATGTAGAGGTGTATACTCAAAGGTTAGTCAGAAGTGATAAATTCAAAACTGGACAAGATCAATATGTCGACAAGGATCTCTTAAGTCAAGATAACAGGGATATATTTATAGGCAGGCTGCCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGATGATCAGAAACGTGACTGCGAATTTGATCGTGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTATTGCTCAAGAGCAAATTTGTTTGAGAAGACTCTGGATTTCTAATAATCAAGGTTGGACTGTGGCATATAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTCTTGTCTACAGAAATTCCTGTGTGGATTTTATTCTTTGCACTTGGTGTTTCTTCGGACAGAGAAATAGTAGATTTAATTGACTTTGGCAGAGAGGATCCAACTGTTTTGAATATTCTCTTTGCCTCTGTTCGTGTAGTCGATAATGATGATAAGTGGAAAGACTTTCGAAGGGGTAAAAGAGCTCTGAATTTTTTGGAGAATGAGGTTAAAAAGACGAGCTTCCCACCTGCTGAAAAAATTGAAGATTGCTTGAACCTTTATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGTTATATGGTTAAATGTCTCCTGCAAGCCTATACTGGCCGTAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAATTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGTATGGAAAAGGCTTTGCAAAGGGACCTCTATGGAGATCGTGATGTGCGTCCAATTGAACACTATTTTGATGCTTCCATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTCAAGAGGATGGAAAGAATTTCAGGTGTGGTGGCAACGCTTGGTCGTGCTAATCCCCTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTTGGTGATGCTAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTTCTCTCCACCCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCATCACAGGACTTGTAAGCTTAAACACATTGAAGCCCGTAGTTCCCACCTTGTTTCGTTGTGGGATGGAGAATGTGGTGGACGATACATCTACTTCTCTTAGTGGGAAGCACAGAATTTTTCTCAATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAACGAAAGTGAGACGCAAGCGGCGAAGGAATCTGTTACTGCATCAGGTAGAAGTCAAAAGAGATGAACAACTGAAAGAAGTACGTATATTTTCCGATGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAACAGGATTGATAAGTCTAAGGGGGAAAGCTACACTTTTCAATCCCTTTTGGACAAAGGAATAATTGAACTTATTGGAACAGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTACGGAAGATCAAGGGACTTCGAAATATACCCATTGTGAACTGGATACGTCATTTTTATTAGGTTTAAGCTGTGGACTTGTCCCTTTTGCAAATCATGACCATGCTAGGAGGGCTCTATTTCAATCCCAGAAACACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTAGATACTTTATCTCACCAGTTACACTATCCACAAAGGCCGCTTTTTCGTACTATGACTGCTGATTGCCTTGGGACACCTGGATACCTGTCATCTCACACTGGCATACTACCAAAACCTGAGTTCTATAATGGTCAGAACGCTATTGTGGCAGTCAATGTTCACCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACCGGGCCTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATACTCGGAGCTACAAGGCTGAAGTTGATAATAAAGAATCTTCCGAAAAGAGGAGGAAATCCGATGATGCAATAAATTTTGGTAAGACTCAAAGTAAAATTGGAAGAGTTGACAGCTTGGACGATGATGGCTTCCCTTACATCGGTGCAAACTTGCAAAGTGGAGACATTGTCATTGGTAGGTGTGCAGAATCTGGGGCGGATCACAGTATCAAACTAAAGCACACTGAGAAGGGTATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGATGGCAAGAATTTTGCTGTTGTAAGCCTGAGACAGGTTCGTTCACCATGTCTTGGAGACAAGTTTTCCAGTATGCATGGACAAAAGGGAGTTCTGGGCTTTTTGGAGTCTCAAGAGAATTTCCCCTTCACCATTCAGGGGATCGTTCCAGATATCGTTATTAACCCGCATGCTTTTCCTTCACGACAGACTCCTGGTCAATTATTGGAAGCTGCTCTAGGGAAAGGGATTGCTTCTGGCGGTTCGCTGAAATATGCGACTCCTTTTTCCACTCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGGAGTGAGAGGGTGTACAATGGCCGAACTGGTGAAATGATGCGCTCACTCATATTCATGGGTCCGACATTCTACCAGCGCTTAATTCACATGGCTGAAGACAAGGTTAAATTTCGTAACACTGGACCTGTCCACCCTCTCACACGACAACCGGTTGCGGACAGGAAGCGTTTTGGTGGAATCAAATTTGGGGAGATGGAGCGTGACTGTCTTATAGCTCATGGAGCCTCGGCCAACTTACACGAACGCTTGTTTACCCTCAGTGACTCCTCCCAGATGCACGTTTGCCAGAAATGTAAAAATGTTGCAAATGTGATCCAACGATCGGTGGCAGGTGGTCGTAAGATAAGGGGTCCATACTGTCGTGTTTGCGAGTCGGTGGATGACATTGTGAGGGTTAATGTACCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTCTTCAGCATGGGCATCAATCTCAAGTTTGAAACACAGGTGTGTTGA 3582 42.52 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDDYSEPVNIHDLGETFLKDFCKKSSMAFFNEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVDKDLLSQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWILFFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHRIFLNGEWVGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVANVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQVC 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11597724 11604510 + Carg10757-RA Car01g01281 142145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01281 1193 ProSitePatterns RNA polymerases beta chain signature. 943 955 IPR007121 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 Pfam RNA polymerase Rpb2, domain 2 276 415 IPR007642 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 Pfam RNA polymerase Rpb2, domain 7 1092 1190 IPR007641 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 Pfam RNA polymerase Rpb2, domain 3 494 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 Pfam RNA polymerase Rpb2, domain 6 720 1090 IPR007120 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 Pfam RNA polymerase beta subunit 62 454 IPR007644 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 Pfam RNA polymerase Rpb2, domain 4 590 651 IPR007646 GO:0003677|GO:0003899|GO:0006351
Car01g01281 1193 MobiDBLite consensus disorder prediction 837 858 - -
Car01g01281 1193 MobiDBLite consensus disorder prediction 1 34 - -
Car01g01281 1193 Pfam RNA polymerase Rpb2, domain 5 666 710 IPR007647 GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01281 - - K16252 csv:101212812 2248.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01281 Car09g00358 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01281 Car-Chr1:11597724 Car03g01134 Car-Chr3:9127603 0 dispersed
Car09g00359 Car-Chr9:1958571 Car01g01281 Car-Chr1:11597724 1.05E-41 transposed
Car12g00125 Car-Chr12:697451 Car01g01281 Car-Chr1:11597724 9.09E-94 transposed
Car01g01281 Car-Chr1:11597724 Car09g00358 Car-Chr9:1955322 3.39E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01281 Car_Chr01 FPKM 7.219036 9.229884 8.845618 10.607998 7.502839 7.173077 8.354426 10.653462 11.055905 11.057272