Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01298 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGCCCTTACTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATAGTCGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCATCACAATTACAATACCTTGCAAAACAGTGGGAGTATAAACAAGCAAATGCCGTACGTCTCCTTAGAGAGGAACTTGACATCCTAAGCAAGCAGAGAAAAGAAGTCGAGCTCAAGAAATTGAAGATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGACGCAGAGTATGGTACAGTGACATACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAAATACTTGCAGAGAAACTCCAGGAAAACGTAAAAAATATTGAAAAGCAGTCCTCGCCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAATTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACTGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCACAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATATATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAACTTCGTGAGGAGATAGCAGTACAAAAGGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTAGATCCCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCTTGTCCACCACAAAACTTGACCGGGAACAACGTCATCTATTGGAAGTTATGCTGTCTTCGGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAACTACCAAATTCCGTCCAAGGGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTTATTGGAGATGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATCAACCTCTATGTGTTACCCTATCCACCCATGGGGAAAGGAGAAGAGTGCCATAAGAAATCAACGGCTGATAACTCAACAGTTTCGGCACATGGTTTGCAAGGAGGAACATGTCTTCCAGCCCCTCAGAATGGCTTGCGTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAGCAAAAGGGAAACCGTAATGAATGGAAATAGAGAAAGCAAATCTTGTTCTCCAGAAACGACGGTATGGATACGTTGTGATGTATACGACACGGGAATTGGAATACCAGAAAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCTGATCACGCTCGGAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCAACATTTACATTTGTATTGCCATATAAGGTTTCAACCAGCAGCAGCAGCAGCAGCAGCAGCACTTCCGACGATTCCGATGAGCTCTCAGATGAAGAGTCCACAGATGAAGAAATGACTGAGGGTTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCACCTTCTAATGGATCCACAAGGATGATCCCAAACTCAGTTCGATATCCCAGCTCGACCAAACTCAATGGATTTGTGGACGGTGGTTCTTATCATATTCCTTCAAACAACATCACTCCACAACCACAAGAGACTGCTCTTAGAGATGTCCGTTTAGGCAATGCCACATTAACCTCAAACGAATCACAGTATTCATCAAGTCGGATCAATTCAAATCTTGGCAAGGAGAAATCAACAAACCAACCCGACGCAAATGCTCGGTTCCAAAATGCGAACGTGAATTCCATTCAATGGTTGGAAACAAAGCAAGAAGATACATTGGAAAAGCCAAGTAGTAAACTCCAAAAAACAGATCAGGGTAAAGAGAGGTCCGATGCAAGTTCCCACTGTAGAACTACCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAATCCATGATGAAGAAGTTTGGCCAAAAAATCGACGTGGTAACCAATGGAATTGAAGGTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTGTTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCGGCTGTAAATGCTGGAATCGAGCCAACTACTCCTTGTTGGACTCCCTCATCCCGTAAAAGAATGCCCATCATTGCTATGACGGCGAATACATTGTCAGAAAGCGCGGATGAGTGTTATGAAAACGGTATGGACTCGTTCGTATCAAAGCCAATAACATTCCAAAAGTTGAAAGAATGTCTTGAGCAATATTTACCACAACGTCCCTTGTAA 3018 41.95 MVCEMETDVIEDMDIEALTSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVVQSKRVEIDAEYGTVTYWKQRAMDLEKLLEASLQREQILAEKLQENVKNIEKQSSPVEELSQILKRADNFLHFVLQNAPIVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLEVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPMGKGEECHKKSTADNSTVSAHGLQGGTCLPAPQNGLRGQKHGDRNHLHCDAPGTPSKRETVMNGNRESKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTSSSSSSSSTSDDSDELSDEESTDEEMTEGFFQFQPHSFSSLSPSNGSTRMIPNSVRYPSSTKLNGFVDGGSYHIPSNNITPQPQETALRDVRLGNATLTSNESQYSSSRINSNLGKEKSTNQPDANARFQNANVNSIQWLETKQEDTLEKPSSKLQKTDQGKERSDASSHCRTTSSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGIEGVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIEPTTPCWTPSSRKRMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11683969 11689718 - Carg10739-RA Car01g01298 142162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01298 1005 Coils Coil 181 208 - -
Car01g01298 1005 MobiDBLite consensus disorder prediction 706 731 - -
Car01g01298 1005 MobiDBLite consensus disorder prediction 674 731 - -
Car01g01298 1005 MobiDBLite consensus disorder prediction 771 816 - -
Car01g01298 1005 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Car01g01298 1005 Coils Coil 92 112 - -
Car01g01298 1005 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Car01g01298 1005 Coils Coil 342 362 - -
Car01g01298 1005 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Car01g01298 1005 MobiDBLite consensus disorder prediction 557 571 - -
Car01g01298 1005 ProSiteProfiles Response regulatory domain profile. 861 1000 IPR001789 GO:0000160
Car01g01298 1005 MobiDBLite consensus disorder prediction 686 700 - -
Car01g01298 1005 MobiDBLite consensus disorder prediction 817 843 - -
Car01g01298 1005 Pfam Response regulator receiver domain 862 929 IPR001789 GO:0000160
Car01g01298 1005 MobiDBLite consensus disorder prediction 554 587 - -
Car01g01298 1005 MobiDBLite consensus disorder prediction 771 852 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01298 Car09g00334 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01298 Car-Chr1:11683969 Car20g00576 Car-Chr20:3233680 2.17E-52 dispersed
Car01g01298 Car-Chr1:11683969 Car09g00334 Car-Chr9:1846239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2884 PF02518 HATPase_c 8.00E-28 CL0025 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01298 - - cmos:111445954 1900.95