Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01310 ATGGCGGCCGTTGTGCGAGTTGCCAGTATTCCTGGCCACGATCGAGTTCTCACGGCGGTTATTGCCGGAACGTCCAGTCTTTCGTTTCTGGGATCGGGATTCGTTGTCCTTTGTTACGTCCTCTTCAAAGAGCTTCGAAAATTCTCCTACAAGCTTGTCTTCTATCTCGCCCTCGCCAGTTGGAAATTTGGGATTCTTGTTCCTGTTCCTACCTTGCTGGATCCGGCGACAGGGTTTTACTGTTATGTTCAGGGCTATAGCACTCATTTCTTTTGTGTGGCATCATTCTTGTGGACCACAACCATTGCATTCACCCTTCACCGTGCTGTTGTTAGACACAAAACCGACGTTGAAGATTTTGAGGCCATGTTTCACTTGTATGTATGGGGAACATCGTTAGTGTTGACTGTTATTCGTTCAATTGGCAATAGACATGCACATTTGGGAACCTGGTGTTGGGCACAGTCGGGGCGTACAGGAAAGGCTGTTCACTTTATAACATTTTACATGCCTCTCTGGGGTGCAATTCTCTACAATGGCTTTACTTACCTTCAAGTGATACGCATGCTTGATAATGCTACTCGTATGGCAGTTGGCATCTCAGATAGGACTTACCAGTCAGATCCAAGAGCAGACGTGAAGGCTTTAAACAGATGGGGATATTATCCGCTCATCCTCATAGGGTCGTGGGCTTTTGGTACAATCAACCGTATCCATGATTTTATTGAGCCAGGTCATAAAATCTTCTGGCTGTCAGTTCTTGATGTTGGGATGGCATCTCTAATGGGATTGTTCAATTCAATAGCATATGGTCTGAATTCTTCAGTGCGGCGGGCAATTTGTGAAAGACTAGACCTGTTTGGGCTTGAAAAACTTCGAAGATGGCTTCCCAGCAATCCAACGCTCCCAAACCAACAACAAGAAGGTGAACTGGTTCCCTTGAGAAGTCAAGATCAGCCTCAGCGAATTAGTTAA 975 45.85 MAAVVRVASIPGHDRVLTAVIAGTSSLSFLGSGFVVLCYVLFKELRKFSYKLVFYLALASWKFGILVPVPTLLDPATGFYCYVQGYSTHFFCVASFLWTTTIAFTLHRAVVRHKTDVEDFEAMFHLYVWGTSLVLTVIRSIGNRHAHLGTWCWAQSGRTGKAVHFITFYMPLWGAILYNGFTYLQVIRMLDNATRMAVGISDRTYQSDPRADVKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLSVLDVGMASLMGLFNSIAYGLNSSVRRAICERLDLFGLEKLRRWLPSNPTLPNQQQEGELVPLRSQDQPQRIS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11751705 11755956 - Carg10727-RA Car01g01310 142174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01310 324 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 17 274 IPR017981 GO:0004888|GO:0007166|GO:0016021
Car01g01310 324 Pfam Slime mold cyclic AMP receptor 21 274 - -
Car01g01310 324 SUPERFAMILY Family A G protein-coupled receptor-like 14 285 - -
Car01g01310 324 MobiDBLite consensus disorder prediction 300 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01310 K22987 GCR1, CRLA; cAMP receptor-like G-protein coupled receptor - csv:101216480 547.354
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01310 Car09g00321 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00321 Car-Chr9:1782611 Car01g01310 Car-Chr1:11751705 3.02E-76 transposed
Car01g01310 Car-Chr1:11751705 Car09g00320 Car-Chr9:1780225 7.77E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004383 1 3 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 6 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01310 Car_Chr01 FPKM 0.90133 0.0 0.0 0.0 0.0 0.67298 0.517521 0.0 0.0 0.0