Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01311 ATGGGTATGAAGAGGAAGATGACGTGGAAATCGATGATCGTTTCGAGTTGTTACAAGGCGGAGTCCGACGACGGCGACCGGCACCGGGTTTCGAAGAAAGGTTTGTCGCAGAGGCTGTCGCTGTCGGACGCGAGTAACCCGAGCTCGCCCTTGTCGATCGACGACCTCTCCAATTCTCTCGTCGGACCCAAGCTTCATGTTTTCTCATTCGCTCAACTTCAAACCATCACTCACAATTTTGCCTCGTCGAATTTGCTTGGAGAAGGCGGGTTCGGTCCGGTCTACAAAGGGTTTGTCGATGATAAGATTAAACCGGGTTTGGAGGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCCACGGATCTCAAGGCCATAAAGAATGGCTGGCAGAGATAATAATTTTGGGTCAAATGAGGCATCAAAATTTGGTGAAACTTATCGGTTATTGCTGGGAAGAAGAGTACAGGCTTTTGGTTTATGAGTATATGGCCAGAGGCAGTTTAGAAAACCAGCTTTTTAGAAAGTATTCAGCTGCTTTGCCTTGGTCAACCCGGATGAAAATCGCTTTAGAAGCTGCCAAAGGCCTTCAATTCCTTCACGAAGCAGATCCTCCCGTTATATTTAGAGATTTCAAAACCTCCAATATTCTTCTCGATTCTGATTATACGACGAAGCTCTCAGATCTTGGGTTGGCTAAAGATGGCGTTGACTGCGAAGACCAACCGGACATGACTTGTATTATGGGCACTCAAGGCTATGCCGCTCCCGAGTACGTCAAATCTGGTCATTTGACGACAATGAGCGATGTATACAGTTACGGGGTTGTTTTGGTAGAGCTGCTGACGGGGAAGCCGTCGATGGACCGAAACACGGGCGAGTTTCTAGTGGACTGGGTCAAGCCACTTCTAAAGGACTCCAAACGGCTCTGCCGAGTCATGGACCCAAGGCTTGAGGGGCTGTACTCGGCCGACGGCGCTCGTAAGGCTGCTGCCTTAGCTCATAAATGTCTCAGCCGCAACCCCAAGAGGCGGCCGCCTGCGACGGAAGTCGTTAACGTGTTGAAGTCCTTGCAGGACTTTAATGACGTGTTTACGGCGCCGTTTGTGTACGTGGTGGAGGATTGCTGCGTGGAGGAGGGGAAGAAGGAAAATGGGCTTGGGCTTGGGCTTGGTGGGCTGGGCTGGAAAAACTGGAGGCCCATATCTGTATGA 1212 50.66 MGMKRKMTWKSMIVSSCYKAESDDGDRHRVSKKGLSQRLSLSDASNPSSPLSIDDLSNSLVGPKLHVFSFAQLQTITHNFASSNLLGEGGFGPVYKGFVDDKIKPGLEAQPVAVKLLDLHGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEEEYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDGVDCEDQPDMTCIMGTQGYAAPEYVKSGHLTTMSDVYSYGVVLVELLTGKPSMDRNTGEFLVDWVKPLLKDSKRLCRVMDPRLEGLYSADGARKAAALAHKCLSRNPKRRPPATEVVNVLKSLQDFNDVFTAPFVYVVEDCCVEEGKKENGLGLGLGGLGWKNWRPISV 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11756567 11758563 - Carg10726-RA Car01g01311 142175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01311 403 Pfam Protein kinase domain 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01311 403 ProSiteProfiles Protein kinase domain profile. 80 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01311 403 MobiDBLite consensus disorder prediction 35 50 - -
Car01g01311 403 MobiDBLite consensus disorder prediction 23 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01311 - - - cmax:111480850 770.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01311 Car09g00319 CCT
Car01g01311 Car09g00319 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01311 Car-Chr1:11756567 Car05g01342 Car-Chr5:12122848 9.77E-161 dispersed
Car01g01311 Car-Chr1:11756567 Car10g00689 Car-Chr10:3575767 1.10E-155 wgd
Car01g01311 Car-Chr1:11756567 Car11g00610 Car-Chr11:3335484 5.90E-161 wgd
Car01g01311 Car-Chr1:11756567 Car17g00646 Car-Chr17:6046593 2.30E-124 wgd
Car01g01311 Car-Chr1:11756567 Car09g00319 Car-Chr9:1777465 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88610 PF00069 Pkinase 1.30E-46 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01311 Car_Chr01 FPKM 16.301136 15.321399 11.632506 12.336815 15.184801 14.113158 15.631746 12.06751 9.92325 11.55983