Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01317 ATGTCTATGACGAGGGCGGCCGCCATGGCATTTCCTATTCAGCTTCTTATTCTGGTTTTTCTCTTCTGTGTTAGCGCCGGTGTGGTGGATTCCGATGATGGAGCTACGTTGTTGGAGATGAAGAAATCATTGAGGGATGTGGATAATGTTCTATATGATTGGACAAGCTCACCTTCTTCAGATTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGCTATCACTCTTAATCTTTCTGGTCTCAACCTGGTCGGAGAAATTTCTCCTTCGGTCGGGAAGCTCAAGGGCCTGCAAACTTTACTGATTGGACCAATCCCTTCAACCTTGTCTCAGATTCCAAACTTGAAGGTCTTTGATGTTAGAAACAACAGTTTAACAGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTGCAGGGGAACTGAATGATAATCATCTTACTGGGAGTATTCCAGCCGAGCTAGGGAAACTAACCGATTTGTTCGACCTAAATGTTGCTAATAACAATCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCACGGAAATAAGTTGAACGGAACGATTCCGCTGTCTTTCCAGAGGCTAGAGAGTATGACTTACCTGAATCTGTCCTCAAATGATCTACAAGGTCCTATTCCAGTTGAGCTATCTCGAATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAGTTAATGGCACAATTTCTTCGTCGTTCGGAGATCTCGAACATCTCCTAAAGCTAAATCTGAGCGGGAATCGCTTAACGGGATCTATTCCAGCTGAATTTGGCAATCTAAGAAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGACACAACTTCAAAATCTGCTCTCCTTGAGACTTGAAAACAACAATCTATCCGGGGACGTGAGGTCGTTGATAAACTGCCCGAGTCTTACCGAACTAAACGTATCTAATAACAATCTAGTGACGTTATCTAAGGCCGTTATCCTCGGGATCGCTCTTGGTGCTCTAGTAATTCTTCTAATGATGATCCTCCTAACCGTGTGCCGACCGAACAACACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCAAATCCCAAGCTAGTAATCCTTCACATGAACATGGCACTTCACGTGTACGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATAATCGGACATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAATTGCAAACCTGTGGCTATCAAAAAGCTCTACTCTCACCAGCCCCTAAGCATGAACGCGTTCGAGACCGAGCTCGAAACCGTCGGTAGCATCAAGCACAGAAATCTAATCTTATCGAAAACGTCCAACAACGCGGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTCCAAGGATCTTGGAGCTGTAAAGAAGGCGTTTCAGCTCGCTCTCCTGTGTACCAAGAGGCAGCCATCTGATAGGCCAACGATGCACGAAGTAACGCGCGTCATCGGCAGTCTTCTGCCCTCGGCAGCACCACTGAAGCCAATACCATCTGTTGCATCACTGCCCCCATCTGCAAGAGTCCCTAGCTACAAGGATGAATATGCAAAGCTTAAAACGCCGCACGTGCTGAACTGCCCGTCGATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTTGGAGAGGTTATATCACAGAACAGTGAGTAA 1866 44.8 MSMTRAAAMAFPIQLLILVFLFCVSAGVVDSDDGATLLEMKKSLRDVDNVLYDWTSSPSSDYCIWRGVTCDNATLNAITLNLSGLNLVGEISPSVGKLKGLQTLLIGPIPSTLSQIPNLKVFDVRNNSLTGSIPQTIGNCTAFQGPVIQSSHWRDTIQHWFPSSSHIVLAGELNDNHLTGSIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPLSFQRLESMTYLNLSSNDLQGPIPVELSRIGNLDTLDISNNKVNGTISSSFGDLEHLLKLNLSGNRLTGSIPAEFGNLRSVMEIDISHNQLSGFIPQELTQLQNLLSLRLENNNLSGDVRSLINCPSLTELNVSNNNLVTLSKAVILGIALGALVILLMMILLTVCRPNNTIPFPDGSLDKPVTYSNPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMNAFETELETVGSIKHRNLILSKTSNNAVMETVDPEITATSKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSAAPLKPIPSVASLPPSARVPSYKDEYAKLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11782459 11791893 - Carg10720-RA Car01g01317 142181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01317 621 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Car01g01317 621 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Car01g01317 621 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01317 K20718 ER; LRR receptor-like serine/threonine-protein kinase ERECTA [EC:2.7.11.1] - cpap:110809270 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01317 Car-Chr1:11782459 Car02g00793 Car-Chr2:5775093 1.51E-21 dispersed
Car01g01317 Car-Chr1:11782459 Car09g00316 Car-Chr9:1754183 6.43E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g166 Blo01g01442 . . . . . . . . . Cma01g01701 . . . . . Cpe06g00261 . . . . . . . . . . . . . . Cone4ag1700 Cone7ag1617 . . Lsi04g01384 . . . . . . . . . . . . . . . . Car01g01317 . . Cpe02g00292 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001314 3 2 3 2 3 1 5 2 2 2 2 1 4 1 0 4 1 0 3 1 2 2 2 1 1 2 2 2 0 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01317 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0