Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01319 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACAAGAGGGAAGAGGAACTGAAGATTGGTGAAATGAAACCCATGTGTGAGGATGTTTTTGACAACCCGGATGACTCTGATCGCATTGTCCGAAATGGGGATGATTCTGAAGGGACTGACCCGCTTGCGATTGCTGTTGATGGGCCAGACCGCCACGATGCTGATCGACTGATATTGTTTGAGGATATGGTCAGAGCAATGCACGATGACGGCGATGATGGTGCTCATTGGGATGATGACGTCGGCGGCAGCGGTGGGGCTATCAATCCTCGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGTGGGGAGAGTAGTAGAGCCTCGGCTTTGGCTTTGTCTTCTACAGTGGAGACTACTATTGAGGATCGCGATCGCGATGTCCACCATAAGCGCGCTAAAGTTCTCTCCAAATTCAATGAGTACTCCTTTGCAACTCCATGGCTATTGGGTGCTGGAAATCTTACAAGAGATCACGATTTTAGTCCTGGATCATCTTCAATTATGTCTAAGAGTGATTTTTTCAGTCATGGTTCTTCATCAAACAGAGTTAACAACGACGGAGATTTTGAATCTAGTTTTGGCAATGATGATGAGATAAATGAGAATGGGGCCGGTAAATTAGAGGGATCTGAAGTAAGAATAGATCTTACGGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAGTTTGAGGATATGTGTGGACGGTATCCTAATGCGACAGAGGTGAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCAATGAAAGCAGTTTTTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACATTTTTCCATGCCCTGGCTGATTGCCATTTGTTGAAGAGCTTGACTGTCAACGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCACGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGTATATCTGTCAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGCAGCAACATGGCACATGCTGGTCTTAGTTGCCCTCTTCTTCGTGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCGATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTGCTATGACCTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGATTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACTGCAATATCTAGTTGTTCTAGGTTGAAGTTGTCTGAGGCTGTATTTGAATGGGTTGAAACGGATGGAGACTTATTTCAGGTTTTGGAGCTTGATAATTGCAGTCTGTTGACTTCTGTGTCACTGGATCTTCCTCGTTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTAAATTATCATCCATTATGGTATCTAATTGTCCTTCTCTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTACAAGATGTGGACCTCACAGATTGTGAATCTCTAACAAATTCTATTTGTGAGGTCTTTAGTGACGATGGTGGATGCCCGACGTTGAAATCACTTGTTCTAGATAACTGCGAGAGTTTGACAGCCGTTCAATTCCGTAGCAGTTCTTTAGAAAGTCTTTCCCTTGTCGGTTGTCGGGCAGTCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAAGTATCTCTAGATGGCTGTGATCATCTTGAAAGGGCATCATTTTCCCCTGTTGGTCTGCGATCACTAAACCTGGGAATTTGTCCCAAATTGAATGAATTAAGACTTGAGGCCCCTCGTATGGATTTACTTGAGTTGAAAGGCTGTGGTGGATTGTCTGAGGCGGCCATCAATTGCCCTCGTCTAACATCGTTGGATGCTTCCCTACTGAAAGACGAGTGCTTGTCTGCAACAACTGCCTCGTGTCCACAGATTGAGTCGTTAATTCTGATGTCATGTTCTTCGGTTGGTTCAATGGGGCTTTACTCTCTGCAATGTCTTCCGAAGTTGGTTGTGCTTGATTTATCATATACATTTTTGACGAGCTTGCAGCCAGTCTTTGAGTCTTGTTCTCAACTCAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAACCTCTATACAAGGAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGATTTGTCTTACGCGATACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACAGTTAACTCATGTGAGCTTAAATGGGTGCGTGAACATGCACGATCTAAATTGGGATTGTAGCATTAGGCAGCTTTCGTCGTCGGGCACCCCCCTTCCTCTTGGTCCGGCCACCATTGATGATATTGAGAAACCAGTTGCACAGCCAAACCGTTTGTTACAGAATCTTAATTGTGTAGGTTGTCAAAACATTAGGAAGGTTCTCATTCCTCCAGCCGCACGTTGTTTTCATTTATCATCGTTGAACCTATCTCTGTCTGCAAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGTAATTGTTGCTCTCTGGAGGTTTTGAGACTCGACTGCCCGAGGCTGACCAGCCTCTTTCTCCTGTCCTGCAACATCGAGGAAGAAGCAGTCGAAGCTGCAATATCAAAATGTAGCATGCTCGAGACGTTAGATGTCCGCTCCTGTCTGAAGATCTCGCCAATTAGCATGGTACAACTGCGTGTCGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3129 43.91 MTIWCCLCFTVGEEDKREEELKIGEMKPMCEDVFDNPDDSDRIVRNGDDSEGTDPLAIAVDGPDRHDADRLILFEDMVRAMHDDGDDGAHWDDDVGGSGGAINPRNFSFGILHQSEGGESSRASALALSSTVETTIEDRDRDVHHKRAKVLSKFNEYSFATPWLLGAGNLTRDHDFSPGSSSIMSKSDFFSHGSSSNRVNNDGDFESSFGNDDEINENGAGKLEGSEVRIDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVFSLRNLEVLTLGRGQLGDTFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAHAGLSCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIAMTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSCSRLKLSEAVFEWVETDGDLFQVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDDGGCPTLKSLVLDNCESLTAVQFRSSSLESLSLVGCRAVTSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASLLKDECLSATTASCPQIESLILMSCSSVGSMGLYSLQCLPKLVVLDLSYTFLTSLQPVFESCSQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYAILCQSAIEELLACCTQLTHVSLNGCVNMHDLNWDCSIRQLSSSGTPLPLGPATIDDIEKPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSANLKEVDVSCYNLCFLNLSNCCSLEVLRLDCPRLTSLFLLSCNIEEEAVEAAISKCSMLETLDVRSCLKISPISMVQLRVACPSLKRIFSSLSPT 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11798213 11806195 - Carg10718-RA Car01g01319 142183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01319 1042 ProSiteProfiles F-box domain profile. 226 272 IPR001810 GO:0005515
Car01g01319 1042 Pfam F-box-like 234 273 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01319 - - - csv:101215035 1705.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01319 Car09g00313 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01319 Car-Chr1:11798213 Car17g00259 Car-Chr17:1599925 4.44E-06 dispersed
Car09g00313 Car-Chr9:1731246 Car01g01319 Car-Chr1:11798213 0 transposed
Car01g01319 Car-Chr1:11798213 Car09g00312 Car-Chr9:1727300 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01319 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0