Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01333 AAAGAAAAAAAAAGTAATTATATAAATACATACAGTCATAGTCTTCGTCTCCAGAGTGTTCGAAGTTTCAGATTGAAATTGCCGATTCATTCGCCGATGGATCAATTCAGAAATCAACCGCGGCTACCGAAATTTGCCGTTCCAAAACGATACGAGATCAGCCTCAAACCGGACCTCTGTCTCTGTAAATTCTCTGGTTCTGTAGCAATCGATGTCGATATCCTTTCCGATACTCGATTTTTGGTGCTCAATGCTGCCGACCTTCATGTCGATGATGCTTCTGTTTCCTTCAAGCATCGGAGCTCCTCCAAGGTTTTCCAGCCTTCAAGTATTCAAGCTTGTGAAGAGAACCAAATTTTCGTTTTGGAGTTTGCAGAGACGCTACCAACTGGGTCAGGAACATTGTCTATCAATTTCGAAGGAATCTTGAATGATAAAATGAAAGGATTCTATAGAAGCACTTATGAGCACAATGGTGAGAAGAAAAATATGGCTGTTACACAATTTGAACCTGTTGATGCTAGACGTTGCTTCCCTTGCTGGGATGAACCTGCTTTTAAGGCTACATTCAAAATCACGTTAGATGTACCATCTGAACTAATAGCACTTTCCAACATGCCAATTATTGAAGAAAAAGTGAATGGGCATCTAAAGACGGTTACATATCAAGAATCACCAATTATGTCCACATATTTAGTGGCCATGGTTGTTGGTTTATTTGATTATGTGGAAGATCATACAGCTGATGGGGTGAAAGTTCGTGTATACTGTCAAGTTGGAAAGGCAAATCAAGGAAAATTTGCGTTACATGTCGCTGTGAAGACTCTTGACCTATACAAGGAATATTTTGCTTGCCCATACACCCTGCCAAAACTCGACATGATTGCAATTCCAGACTTTGCTGCTGGGGCCATGGAAAACTATGGTTTAGTTACCTACAGGGAGACTGCTTTACTTTATGATGATCAGCACTCAGCAGCTGCCAACAAACAGAGGGTGGCAACCGTCGTGGCTCATGAACTTGCACACCAATGGTTTGGAAACCTCGTAACTATGGAGTGGTGGACACATTTATGGCTGAATGAAGGATTCGCAACATGGGTGAGTTATTTAGCTACTGATAGCTTGTTTCCAGAATGGAAAGTATGGAATCAATTTCTTGAAGAATCAAATCATGGTCTTACGTTGGATGGTCTTGCTGAATCACATCCTATTGAGGTTGAGATAAATCATGCCAGTGAGGTTGATGAAATATTTGATGCAATTAGCTACAGAAAAGGTGCATCTGTTATTCGAATGTTACAAAGTTATCTCGGTGCCGAGTGTTTTCAGAAATCACTTGCTTCGTACATTAAAAGGCACAGTTGCTCAAATGCAAAAACTGAAGACTTATGGGCTGCACTTGAGGAGGGGTCTGGTGAACCTGTGAACAAATTAATGAGTTCCTGGACTAAGCAACAAGGATATCCTGTTGTCACAGTCAAAGTGAAAGATGAGAAATTGGTGTTTGAGCAGTCAAGGTTTTTGTTGAGTGGTTCCTGTGGAGAGGGGCAATGGATTGTTCCCATAACATTGTGTTGTGGCTCCTATGATGTGCGCAAGAATTTTCTGCTGCAAACGAAGACAGAATCTGTTGACATCAAGGAGTTCCTCGGTTGTTCCTTCAGAAAATGGGATGGTGGAAATGATAAATCTTGTGATTGGATAAAGCTTAATGTGGATCAGACTGGTTTCTACCGGGTGAAGTATGACACAGATCTTGCATATAAGCTTAGAAATGCAATAGAAAAAGATCATTTGACTGCAACTGACAGATTTGGTATTTTGGATGATGCATTTGCCCTTTCTATGGCTTGCCAGCAATCAGTTACTTCTTTGTTTACCTTAATAAGTGCTTACAGAAAGGAACTTGACTATACTGTGTTATCGAATTTGATCAGTATAAGCTATAAACTTGAAAAAATTGTGGCTGATGCAATTCCTGAGGCCCTGGTCAGCATCAAACAATTTTTCATCAACAATTTCTACTTTGCAGCAGAAAAACTGGGTTGGGACCCGAAACCAGGCGAAAGCCATCTTGATGCAATGTTGAGAGGAGAAATATTGACGGCTCTTGCTCTGTTCGGTTGTGAATCAACAATAAAAGAAGCGAATAGGCGATATCATGCATTTTTAGATGACAGAAGTACGCCACTCCTCCCACCTGATATTAGAAAGGCTGCGTACGTGGCGGTAATGCAGACAGTCAGTACTTCAAACAGATCTGGTTACGAATCACTTTTAAGAATTTATAGAGAGACTGATCTTAGCCAGGAGAAAACACGCATTTTAAGTAAATCACATATCATTTTTGGTCAACTAACGAGTTTCCTTGTGTTGTGTGTAATATTCATATGA 2397 40.43 KEKKSNYINTYSHSLRLQSVRSFRLKLPIHSPMDQFRNQPRLPKFAVPKRYEISLKPDLCLCKFSGSVAIDVDILSDTRFLVLNAADLHVDDASVSFKHRSSSKVFQPSSIQACEENQIFVLEFAETLPTGSGTLSINFEGILNDKMKGFYRSTYEHNGEKKNMAVTQFEPVDARRCFPCWDEPAFKATFKITLDVPSELIALSNMPIIEEKVNGHLKTVTYQESPIMSTYLVAMVVGLFDYVEDHTADGVKVRVYCQVGKANQGKFALHVAVKTLDLYKEYFACPYTLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWKVWNQFLEESNHGLTLDGLAESHPIEVEINHASEVDEIFDAISYRKGASVIRMLQSYLGAECFQKSLASYIKRHSCSNAKTEDLWAALEEGSGEPVNKLMSSWTKQQGYPVVTVKVKDEKLVFEQSRFLLSGSCGEGQWIVPITLCCGSYDVRKNFLLQTKTESVDIKEFLGCSFRKWDGGNDKSCDWIKLNVDQTGFYRVKYDTDLAYKLRNAIEKDHLTATDRFGILDDAFALSMACQQSVTSLFTLISAYRKELDYTVLSNLISISYKLEKIVADAIPEALVSIKQFFINNFYFAAEKLGWDPKPGESHLDAMLRGEILTALALFGCESTIKEANRRYHAFLDDRSTPLLPPDIRKAAYVAVMQTVSTSNRSGYESLLRIYRETDLSQEKTRILSKSHIIFGQLTSFLVLCVIFI 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11864916 11873069 + Carg10704-RA Car01g01333 142197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01333 798 Pfam Peptidase M1 N-terminal domain 47 232 IPR045357 -
Car01g01333 798 Pfam Peptidase family M1 domain 267 483 IPR014782 GO:0008237|GO:0008270
Car01g01333 798 Pfam ERAP1-like C-terminal domain 568 778 IPR024571 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01333 K08776 NPEPPS; puromycin-sensitive aminopeptidase [EC:3.4.11.14] - csv:101215753 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01333 Car-Chr1:11864916 Car14g01108 Car-Chr14:9811574 0 dispersed
Car01g01333 Car-Chr1:11864916 Car15g01113 Car-Chr15:8783488 1.69E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g119 Blo01g01456 . Bda01g00630 . . Bpe02g00498 . . . . Cma01g01717 . . . . . . . . . . . . . Cla05g01851 Cam05g1975 Cec05g1988 . Clacu05g1968 Cmu05g1849 Cre05g1973 Cone4ag1679 Cone7ag1273 . . Lsi04g01408 . . . . . . . . . . . . Cmo01g01794 . . . Car01g01333 . . Cpe02g00276 Bhi09g03122 . . . Hepe01g1902 Mch11g0434 . . . . . . . . . . . Cme07g00203
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001781 2 8 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 2 2 3 2 2 2 2 2 3 1 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01333 Car_Chr01 FPKM 0.0 0.536928 1.336081 1.816522 1.348926 2.080997 2.222255 1.790379 2.183212 2.303063