Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01334 ATGGAGGATCGGGAGGAGGAAGAGAGGGCGGAAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGACATATATGCCATGAAAAAATTGAAGAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTACTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAGGACACATTGACTGAAAATGTGGCTAAATTTTACATTGCACAGAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATCCACAGGGACATTAAACCTGACAATCTTCTCCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCTTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAGTTTGGCAGAACCAATGGACATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTATACCACTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACAGTTGGAACACCTGATTACATAGCTCCAGAAGTATTACTCAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTTGGCTATCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCACTGGAAAAATCAACTGAAGTTTCCAGAGGATGCTAAGTTGTCAATTGAAGCAAAGGATCTCATCTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGTACTGGAGGTGCATACCAAATTAAAGCTCATCCGTGGTTCAAAGATGTCATCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTTAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCCGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACTCGATTCTCAGAGATTGTCAATGAAACAGCCTCCGACTGATATATTAAATGGCACTGCGGGAGACTATGCAGCCGAACTAATAGCCAGTGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1551 43.07 MEDREEEERAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDESLAEPMDIDDNRSSWKSPSEQLYHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNQLKFPEDAKLSIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVIWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPTDILNGTAGDYAAELIASEAEMQMLAVSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11873160 11881339 - Carg10703-RA Car01g01334 142198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01334 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car01g01334 516 Pfam Protein kinase domain 286 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01334 516 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01334 516 MobiDBLite consensus disorder prediction 1 20 - -
Car01g01334 516 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car01g01334 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Car01g01334 516 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01334 516 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01334 Car05g00661 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01334 Car-Chr1:11873160 Car08g00953 Car-Chr8:6369726 0 dispersed
Car01g01334 Car-Chr1:11873160 Car10g00664 Car-Chr10:3399497 0 wgd
Car01g01334 Car-Chr1:11873160 Car11g00590 Car-Chr11:3197413 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88611 PF00069 Pkinase 4.20E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01334 K08790 - csv:101212228 1001.5