Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01342 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGTGAGCAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGACCTCTGCTTGGAAGGCTTATAAAGGGGCACATAAGACACCTTCTGAAGGCTCTCATTCTCCTCGAGCCCCTGATTCTTTCACCGTCGCTGTCGCCACCGTCCTCCGTGCTCCGCCCAAAGATTTCAGGCTTGTTCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACCCTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTGCAGCAATTGCTTGATGTACATCGCAGCAGGGCTGATCTCTTGAAGCAAGCTGAGGAGGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCCATTGCATACTCTCTAGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACCTTGCGAACGGATGCTTCGGTTTACGCTCTTAAGAATTATAAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGTGGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTTTGTCTAAACATTCCAAAGCTTCTGAACCAAGTTTGGTGAAAGTTCGGAAGAACAATGTATCAACTAGGATATCTGCTAGACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACGACTCCCGTTTCAGGGCATGCTTTCTCAACCATAGAAAGAACAGATAACAGCAGTAACAGTAGGCCGAGTTACATGAACCTTACCGAGTCAACAAGGGCGAAGCAGAAGACAAATAGTCACTTATCACTCCGAATTCAAAGACAGTCCATGGATGAATTTCAATTCCTTAAGAAGTCGGCAGCTTTCTCCAACGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGCTGCCAACACAATTGGGTAAGAATGGAACAAAACTAAGATCATGA 1326 47.96 MGGSGKWMKVLIGQRKSDKEDNVSKTKKWRLWRSPSGDLTSAWKAYKGAHKTPSEGSHSPRAPDSFTVAVATVLRAPPKDFRLVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLDVHRSRADLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTDASVYALKNYKFDKNNWGWSWLERWMVAKPWETRLMEQSRTDSIEVTPPSKSCTESVLSKHSKASEPSLVKVRKNNVSTRISARPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTDNSSNSRPSYMNLTESTRAKQKTNSHLSLRIQRQSMDEFQFLKKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTQLGKNGTKLRS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11925877 11928711 + Carg10695-RA Car01g01342 142206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01342 441 MobiDBLite consensus disorder prediction 266 322 - -
Car01g01342 441 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Car01g01342 441 MobiDBLite consensus disorder prediction 405 441 - -
Car01g01342 441 MobiDBLite consensus disorder prediction 405 425 - -
Car01g01342 441 MobiDBLite consensus disorder prediction 351 382 - -
Car01g01342 441 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Car01g01342 441 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Car01g01342 441 MobiDBLite consensus disorder prediction 267 322 - -
Car01g01342 441 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01342 Car-Chr1:11925877 Car11g00811 Car-Chr11:4806138 7.80E-56 dispersed
Car01g01342 Car-Chr1:11925877 Car17g00673 Car-Chr17:6223892 3.38E-76 wgd
Car01g01342 Car-Chr1:11925877 Car09g00291 Car-Chr9:1565094 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01342 - - csv:101210019 754.977