Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01342 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGTGAGCAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGACCTCTGCTTGGAAGGCTTATAAAGGGGCACATAAGACACCTTCTGAAGGCTCTCATTCTCCTCGAGCCCCTGATTCTTTCACCGTCGCTGTCGCCACCGTCCTCCGTGCTCCGCCCAAAGATTTCAGGCTTGTTCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACCCTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTGCAGCAATTGCTTGATGTACATCGCAGCAGGGCTGATCTCTTGAAGCAAGCTGAGGAGGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCCATTGCATACTCTCTAGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACCTTGCGAACGGATGCTTCGGTTTACGCTCTTAAGAATTATAAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGTGGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTTTGTCTAAACATTCCAAAGCTTCTGAACCAAGTTTGGTGAAAGTTCGGAAGAACAATGTATCAACTAGGATATCTGCTAGACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACGACTCCCGTTTCAGGGCATGCTTTCTCAACCATAGAAAGAACAGATAACAGCAGTAACAGTAGGCCGAGTTACATGAACCTTACCGAGTCAACAAGGGCGAAGCAGAAGACAAATAGTCACTTATCACTCCGAATTCAAAGACAGTCCATGGATGAATTTCAATTCCTTAAGAAGTCGGCAGCTTTCTCCAACGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGCTGCCAACACAATTGGGTAAGAATGGAACAAAACTAAGATCATGA 1326 47.96 MGGSGKWMKVLIGQRKSDKEDNVSKTKKWRLWRSPSGDLTSAWKAYKGAHKTPSEGSHSPRAPDSFTVAVATVLRAPPKDFRLVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLDVHRSRADLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTDASVYALKNYKFDKNNWGWSWLERWMVAKPWETRLMEQSRTDSIEVTPPSKSCTESVLSKHSKASEPSLVKVRKNNVSTRISARPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTDNSSNSRPSYMNLTESTRAKQKTNSHLSLRIQRQSMDEFQFLKKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTQLGKNGTKLRS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11925877 11928711 + Carg10695-RA Car01g01342 142206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01342 441 MobiDBLite consensus disorder prediction 266 322 - -
Car01g01342 441 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Car01g01342 441 MobiDBLite consensus disorder prediction 405 441 - -
Car01g01342 441 MobiDBLite consensus disorder prediction 405 425 - -
Car01g01342 441 MobiDBLite consensus disorder prediction 351 382 - -
Car01g01342 441 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Car01g01342 441 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Car01g01342 441 MobiDBLite consensus disorder prediction 267 322 - -
Car01g01342 441 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01342 - - - csv:101210019 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01342 Car-Chr1:11925877 Car11g00811 Car-Chr11:4806138 7.80E-56 dispersed
Car01g01342 Car-Chr1:11925877 Car17g00673 Car-Chr17:6223892 3.38E-76 wgd
Car01g01342 Car-Chr1:11925877 Car09g00291 Car-Chr9:1565094 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g85 Blo01g01460 Blo12g01017 Bda01g00627 . Bpe02g01543 . . Bma01g02209 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0275 . . . . . . . . . . . . . . . . . Car01g01342 . . Cpe02g00266 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00308 CCT,ECH 9 187 IQD Protein Family AT3G09710 57.5 3.0e-50 196.8
Car04g01432 CCT,CST,ECH 84 236 IQD Protein Family AT3G09710 53.9 3.7e-40 163.3
Car04g02506 CCT,CST,ECH 1 282 IQD Protein Family AT5G03040 52.6 2.5e-65 246.9
Car06g00308 CCT,ECH 3 187 IQD Protein Family AT5G03040 63.8 8.6e-58 221.9
Car15g00406 CCT,CST,ECH 1 467 IQD Protein Family AT3G52290 53.0 5.5e-99 358.6
Car04g02506 CCT,CST,ECH 1 285 IQD Protein Family AT3G52290 66.7 6.5e-84 308.5
Car06g00308 CCT,ECH 8 187 IQD Protein Family AT3G52290 55.6 2.9e-47 186.8
Car03g01126 CCT,CST,ECH 95 284 IQD Protein Family AT2G26410 50.3 5.6e-37 152.9
Car11g00811 . 1 412 IQD Protein Family AT3G22190 57.2 1.2e-95 347.4
Car10g00782 . 23 333 IQD Protein Family AT3G22190 50.1 8.1e-63 238.4
Car01g01342 . 1 434 IQD Protein Family AT2G26180 59.7 4.0e-115 412.1
Car09g00291 . 1 438 IQD Protein Family AT2G26180 58.4 8.4e-113 404.4
Car16g00380 . 40 223 IQD Protein Family AT2G33990 52.9 2.1e-48 189.9
Car16g00380 . 43 216 IQD Protein Family AT3G15050 61.6 1.6e-53 206.8
Car06g00798 . 1 500 IQD Protein Family AT4G00820 55.7 3.5e-127 452.6
Car06g00798 . 1 500 IQD Protein Family AT1G01110 52.4 1.8e-123 440.3
Car08g00629 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.6 9.4e-74 274.6
Car10g00607 CST 1 376 IQD Protein Family AT3G16490 52.8 2.7e-68 256.5
Car11g00535 CST 1 382 IQD Protein Family AT3G16490 51.4 4.5e-68 255.8
Car17g00704 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 50.5 2.3e-67 253.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01342 Car_Chr01 FPKM 5.007491 5.509551 5.336214 7.298515 4.007037 6.877672 6.634968 1.713523 1.315117 1.679914