Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01352 ATGTCGAAAATGAAGCATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAGCGATTCCCAACCCGCGACGCGACCCACTTCGACCCCATGCCCCAATAGTAATTCATCGGTGTCTCCTTCTTCTGGGTCCTCCTCCTCTGTGGCTATGCCGTCTTCCACTACAATGGAGGCCGTTGAATCGGTGGTTGATCGGACGGCTTCTGGCGATGTGGATGGTGGCTGCGTCGATTTCAATGCTTTGGAGGAGGAGTTTCAGATGCAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAAGACACTGAGTCCGCTCAGATCGATGCCGCTAAGCGGATGAGCCTTGGCTGTTCGCCTTCCATCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTACAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCGAACTCTAGCACCCGAGGAAAGATGCCACTGTTAGTGGATCTTAAAGAAATATGTGTTACAGGTGATATCGATTATGAAGTGATTTTGGTGAACCGCTTGCTTGATCCCGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGATTGCGGAGTTTCTGAACATGGCTTCATTTTAAGTGGCCTGGTTCAAAAACTTGCTGATGTAGTTGTTGCTAGAATGGGTGGTCCTGTTGGGGACGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAGTTGCGTAGTTCTTTGAACACGATTATTCTACCGCTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAGTTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACACTAATTCCATCAGAGGCACCCAGCGGTCAATTTTCGAATTATGGCTTTGATAGGAGACCCGCAGATGTTATAGCAGTTCCTGAAGATACACCGGTATTAAAAAATGAAGGAGCTGAAGCTGTATTGATTTCATCTACTCAAGATGGCGTAGAAAATGTTTGCAACTTAGTATCCAAAGAAACTTCAGATTTAGGTGTCCAATCAAAAGAAAACGGCAGAAACTTTATCGAAGAAATTCTAAATGGGAGTTCGGATTATGATTTTGAGAAGCTTTTAGAATCAGAAAGCAGTGCATTTGAAAGTTCATCGGGTGCATGTGCACAGTCGGCATCTGCGCAAAAGAAGAAAGTTAAAAAGGTATCGAAGTATGTCATTAGTGCTGCAAAGAACCCAGAGTTTGCACAGAAATTACATGCTGTATTGTTAGAGAGTGGTGCATCACCTCCTGCAGATCTGTTTTCAGATATAGATTCACAGGGAAATGGTGAAAGGAAAGCGATTCACCAAATGTATCCGATCAACGGGAAAGGCATGGATGTTGGGCTTCAGTGCAACCCTTTTGTGTTGGCAAGCCAGGGACAGTCTTCTGCTGAAGCAGAGTATTTGAACAATCTTGTCCATGAAAATAAGCAGAAAGCGTCTACTGTGGGATCAACGGAAGAACAAAAACCTGAGACAAATGCAAACAATCATGGCACTTTTTGGCCTCAGAGTATGAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGGACTCTTCATCGTGAACATGTGGATGGTGTTTCGTTAACCTCTGTTGCCAATTCTCATAAAAAACAACTAGGAAGTACCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAATCGTGAGAGTCCATCAGAAAATTTGATAGAACTTGATGATAGTAACCTGCATGCTAGTGATGGCCACAGCGAGACGATCAACCCGATATTAGGCGAAGTTGCAGAATGGGAAATTCCATGGGAGGATCTTCACATTGGTGAACGTATTGGTATAGGATCGTATGGCGAGGTTTATCGAGCAGATTGGAATGGGACTGAAGTTGCTGTGAAGAAGTTCTTAGACCAAGATTTTTCCGGTGCTGCTTTGGTCCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGACATCCTAATGTTGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCTCATTTCTCAATCCTCACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAACTCGATGAAAGGAGGCGACTGAGAATGGCTTTCGATGTGGCCAAAGGAATGAACTACTTACACACAAGTCATCCAACCATTGTTCATAGAGATCTTAAGTCCCCCAATCTCCTCGTCGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGGTTGTCACGTGTCAAGCAGAACACGTTTCTGTCTTCAAAGTCAACTGCTGGAACGCCCGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCCAATGAGAAGTGTGATGTGTATAGTTTCGGTGTGATCTTGTGGGAGTTGACGACATGTCGCATACCGTGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTAGGATTCCAGAATAGGCGCCTGGAAATCCCAGAAGATGTTGATCCAGCAGTAGCACAGATCATTTGCGATTGTTGGCAAACGGACACGCAACTGAGGCCATCATTCTCTCAGCTTATTACTCGATTACGACGTCTTCAACGGCTTGTTCGGAAAACAAACTCCGGGAATCTAATATCGGAGTGA 2850 44.07 MSKMKHLLRKLHIGGGLNEHQRLSDSQPATRPTSTPCPNSNSSVSPSSGSSSSVAMPSSTTMEAVESVVDRTASGDVDGGCVDFNALEEEFQMQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTGDIDYEVILVNRLLDPELQQLERQAYNIFMDCGVSEHGFILSGLVQKLADVVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKVDNGSEYIIDLMGAPGTLIPSEAPSGQFSNYGFDRRPADVIAVPEDTPVLKNEGAEAVLISSTQDGVENVCNLVSKETSDLGVQSKENGRNFIEEILNGSSDYDFEKLLESESSAFESSSGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGERKAIHQMYPINGKGMDVGLQCNPFVLASQGQSSAEAEYLNNLVHENKQKASTVGSTEEQKPETNANNHGTFWPQSMNEGFVFVDVNGEAGKLVDVNGTLHREHVDGVSLTSVANSHKKQLGSTLVDEERRWLQDNRESPSENLIELDDSNLHASDGHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLRMAFDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDTQLRPSFSQLITRLRRLQRLVRKTNSGNLISE 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11967808 11975164 + Carg10685-RA Car01g01352 142216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01352 949 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524
Car01g01352 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Car01g01352 949 MobiDBLite consensus disorder prediction 13 65 - -
Car01g01352 949 Pfam Ethylene-responsive protein kinase Le-CTR1 136 340 - -
Car01g01352 949 Pfam Protein tyrosine and serine/threonine kinase 679 931 IPR001245 GO:0004672|GO:0006468
Car01g01352 949 MobiDBLite consensus disorder prediction 20 65 - -
Car01g01352 949 ProSiteProfiles Protein kinase domain profile. 679 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01352 Car-Chr1:11967808 Car12g00824 Car-Chr12:7932155 2.27E-71 dispersed
Car18g00058 Car-Chr18:291307 Car01g01352 Car-Chr1:11967808 0 dispersed
Car01g01352 Car-Chr1:11967808 Car09g00284 Car-Chr9:1532056 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88612 PF07714 PK_Tyr_Ser-Thr 5.00E-65 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01352 K04424 - csv:101214554 1574.3