Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01358 ATGGGAATCTGCATATCCGCTGCATCTTCTCAGATTCGCCATGAAACTAAAGTTACGGCGATTTGTGCAGCAAACGAGCTTGCTTTTGAAGAACAGAGATCCGATTCCGTGTGTTCCAAGCAAGGCAACAAAGGGATCAATCAAGATGCTGCCTTTGTCTATCAGGAGTACGGCGAACAGGGCAGGGCTCTGTTCGGAGTGTTCGATGGGCATGGAACAAATGGTCATACTGTCAGCAACATGGCGAAGAATAGACTGCCGGCGCTGTTGCTAAGTGCTGTCTCAAAAGCTGAGACTGATTTTGTTGGGTGGAAAGAAGCTATGGTCACTGCCTTCAAGGTGATGGACAAAGAGATCAAACTTCAAGAGAATTTGGACTGTTCTTTTAGTGGAACCACCGCTGTTATTATTCTCAAACAGGGAGAAGATTTGGTGATTGCGAATTTGGGGGATTCGAGGGCTGTGATGGGGAGGGTGACGGAGAATGGCATCGAGGCCGTTCAATTAACGACTGATTTGAAGCCTGGTTTGCCGGATGAAGCTGAGCGGATAAGGAAGTGTAATGGGAGAGTGTTGGCTTTACAAGAAGAGCCGCATATACAGAGAGTGTGGCTGCCGAAGGAGGACGCGCCGGGGCTGGCCATGTCCAGAGCTTTTGGGGACTTTGCTCTTAAAGAACATGGCATTATTGCTCTTCCCGATGTCTCCTACCGCCGTCTCGCTCCCGACGACCACTTCATCGTGCTCGCCACAGATGGGATATGGGACGTGCTGAGCAACGACGAAGTAGCGTCCATCGTGTCGAAAGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGACTGAGGCTTGGAAACGCTACCCAGCTTCCAAACTCGACGACCGCACCGTCACAGCTATGTGGGTGAAACTCCGGGATCCGTACAAGTTAGAGCCGTCGTTCTCCGCCGTCGGTACGGCCATGTCCGGGAGAGTACTTAAGGCTGCAGGCTTTATTGAAGGGAGTGATAGTGAAATAATGATACAAAAATTTGTTGTCAAATGGAATATGTTGCCGAGGTTAATTATGGAAAATGACAACAAATTTTCGAGATAA 1107 50.14 MGICISAASSQIRHETKVTAICAANELAFEEQRSDSVCSKQGNKGINQDAAFVYQEYGEQGRALFGVFDGHGTNGHTVSNMAKNRLPALLLSAVSKAETDFVGWKEAMVTAFKVMDKEIKLQENLDCSFSGTTAVIILKQGEDLVIANLGDSRAVMGRVTENGIEAVQLTTDLKPGLPDEAERIRKCNGRVLALQEEPHIQRVWLPKEDAPGLAMSRAFGDFALKEHGIIALPDVSYRRLAPDDHFIVLATDGIWDVLSNDEVASIVSKAESEEAAAKAVVEAATEAWKRYPASKLDDRTVTAMWVKLRDPYKLEPSFSAVGTAMSGRVLKAAGFIEGSDSEIMIQKFVVKWNMLPRLIMENDNKFSR 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12004334 12006146 + Carg10679-RA Car01g01358 142222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01358 368 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169
Car01g01358 368 ProSiteProfiles PPM-type phosphatase domain profile. 34 306 IPR001932 -
Car01g01358 368 Pfam Protein phosphatase 2C 37 284 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01358 - - - csv:101214070 379.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01358 Car-Chr1:12004334 Car08g00065 Car-Chr8:384030 1.12E-93 dispersed
Car14g01498 Car-Chr14:12409636 Car01g01358 Car-Chr1:12004334 6.36E-32 dispersed
Car17g00262 Car-Chr17:1625720 Car01g01358 Car-Chr1:12004334 2.07E-32 dispersed
Car01g01358 Car-Chr1:12004334 Car05g00767 Car-Chr5:5959827 3.06E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g55 . . Bda01g00611 . . Bpe02g00479 . . . . Cma01g01746 . . . . . . . . . . . . . Cla05g01817 Cam05g1941 Cec05g1954 Cco05g2014 Clacu05g1933 Cmu05g1814 Cre05g1940 Cone4ag1650 . . . . . . . Blo17g00295 . . Bda13g01610 Bpe14g00255 . . . Sed13g1849 Cmo01g01764 . . . Car01g01358 . . Cpe02g00251 Bhi09g03173 Tan01g4645 Cmetu07g0228 . Hepe01g1867 Mch11g0402 . . . . . . . . . . . Cme07g00239
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011216 2 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01358 Car_Chr01 FPKM 17.67123 17.872038 24.384867 26.844351 16.569904 16.580959 16.462927 29.446104 29.363371 29.034552