Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01369 ATGGAGGATTATAATAATCATCTAAACGAGAACTCAAATCCGAGAGGCAATTTCTTGTACGCATCAGCCAATTCTTCATCTGGTAATTATGGAAGATCAAGCAATCCGACGGCTCAGATGCCTGCTCACACGTTTCATCTTCAACAAGGAGCTGATTGTTTTCAACCCGATCAATCGCACCCGATCGTCAAGTCGGAAGCCAGTACTTCCCACCACCAGCTCCTCAAATTCCACTACTCTTTAGAACAGCCGCCGCCGCCGCCGCCGACGACGACGACGACAACATGTCGGCCTGACGATGACGGCGGCGTTGATGTTGAAGCCATAAAAGCCAAAATCATGGCTCATCCACAATATTCCAGCCTCCTTGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCAGCTGGTGGCTGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCTGGAGATTCCACGAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATACCGAGAGGAACTTACAAGGCCAGTTCAAGAAGCCATGGATTTCATGCGCAGGATCGAATCTCAGCTCAATTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATCGGATCGTCAGAGGAGGAACAAGAGAATAGCGGGGGAGAAACCGAGCTACCGGAGATCGACCCACGAGCCGAAGACAGAGAATTGAAGAACCACCTACTAAGGAAGTATAGTGGTTTCCTGAGCAGTCTAAAGCAAGAACTGTCTAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGATGCAAGACAGAAGCTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATATCCTTCAGAGACAGAGAAGGTAGCATTGGCTGAATCCACTGGATTGGATCAAAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTTCCAATGCAGCGCTCTACCTCGACGGTCATTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1110 47.93 MEDYNNHLNENSNPRGNFLYASANSSSGNYGRSSNPTAQMPAHTFHLQQGADCFQPDQSHPIVKSEASTSHHQLLKFHYSLEQPPPPPPTTTTTTCRPDDDGGVDVEAIKAKIMAHPQYSSLLEAYMECQKVGAPPQVVEQLVAARQEFEARQRSSMVSGDSTKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIESQLNSLCNGPVRIFNSDEKCEGIGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGFLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPSNAALYLDGHYMTDGHYRLGP 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12038100 12040651 + Carg10668-RA Car01g01369 142233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01369 369 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Car01g01369 369 MobiDBLite consensus disorder prediction 80 101 - -
Car01g01369 369 Pfam KNOX2 domain 163 208 IPR005541 GO:0003677|GO:0005634
Car01g01369 369 MobiDBLite consensus disorder prediction 222 246 - -
Car01g01369 369 Pfam KNOX1 domain 108 150 IPR005540 GO:0003677|GO:0005634
Car01g01369 369 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Car01g01369 369 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Car01g01369 369 MobiDBLite consensus disorder prediction 7 39 - -
Car01g01369 369 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Car01g01369 369 MobiDBLite consensus disorder prediction 1 39 - -
Car01g01369 369 Pfam ELK domain 251 272 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01369 Car05g00098 CCT
Car01g01369 Car09g00271 CCT
Car01g01369 Car12g00568 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01369 Car-Chr1:12038100 Car11g01493 Car-Chr11:12047728 7.56E-84 dispersed
Car06g00770 Car-Chr6:5903329 Car01g01369 Car-Chr1:12038100 2.12E-10 transposed
Car01g01369 Car-Chr1:12038100 Car12g00568 Car-Chr12:3802660 1.83E-117 wgd
Car01g01369 Car-Chr1:12038100 Car05g00098 Car-Chr5:503872 6.59E-119 wgd
Car01g01369 Car-Chr1:12038100 Car09g00271 Car-Chr9:1479832 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2889 PF03791 KNOX2 1.00E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01369 - - csv:101213104 587.03