Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01376 ATGCCAAATAGTTTCTTAGCTTCTCAGCATTATAATGGTGATTTGGTTTCTCCCTTGTCTGTAATGCCACTCAATTCAGATGGATCTCTTTGTTTCATGGAGTCACTCAGCACATTACAACCTCAAGAAATGTTGCCAAATATCTCACCAAAGCTTGAGGACTTTCTTGGTAGTGCAAATCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATATTACAATCAAAATGATGGTGCTGATGCTGTCTCAGAGAGGCAACATTGTTTGAATCTTTTTAAACAACAAGAGCAACATATTCTTTTTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCTTATTGCAAGCCATAGCTATGAAATTCGACACGCTATGGAGCAGCCTATCGATCGGATGAGTAGCCAAGATGTAGAGCCGCTAAGCTTGTCAATGAGTCCTGGTTCTCAGTTTAGTTGTGTTACTGCACCAACCCAAATTTGTCATCCTGGACTAGCCACCATGGAAACAAAGAAAAGGGGTTTGCTTGGTCGAAAGAAGCCGGTCCACCGGAAGTCGATCAACACGTTTGGACAAAGAACATCACAGTACAGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGGCAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACGCATTTGAACTTCCCGTTAAAGAGTTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTCGCCCATCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGGTCTGAAGCATATGACATAGCAGCCATCAAGTTCCGTGGCACAAACGCGGTTACAAACTTCGACACTTCAAGATACAACGTAGAAAGGATCATGGCGAGCAGCAGCCTTCTTTCAAGAGAGATAGCAAGACGAAACAAAGAGCACAAACTAACCAACGCAATCGAGCGCAAAGAACCGACACAAAACATCGATCAAATCGACCCCTCGGAGATATCCAACAGCAACAACATAGTTTGGAGGTCGGCATTCGACGACACGATGTTGCTGGATCGAAACACAACCATTGAATCCATAGACCGAAAGTCGGTAACATCCTGTGGTTACCTAAACCATCTAATGGGAGTGGAAACGGCAACGGTGAAGGATTCAAGGAAGTTCAAGGCACATTTCTCCAATGCTTCAGTTTCTTTGCCTGTTATGTCAAGTGTTAGGAATGATGTCTGA 1359 43.93 MPNSFLASQHYNGDLVSPLSVMPLNSDGSLCFMESLSTLQPQEMLPNISPKLEDFLGSANHGREATALSLDSIYYNQNDGADAVSERQHCLNLFKQQEQHILFGMFQFPAEDANKESLIASHSYEIRHAMEQPIDRMSSQDVEPLSLSMSPGSQFSCVTAPTQICHPGLATMETKKRGLLGRKKPVHRKSINTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKSYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRSEAYDIAAIKFRGTNAVTNFDTSRYNVERIMASSSLLSREIARRNKEHKLTNAIERKEPTQNIDQIDPSEISNSNNIVWRSAFDDTMLLDRNTTIESIDRKSVTSCGYLNHLMGVETATVKDSRKFKAHFSNASVSLPVMSSVRNDV 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12078855 12081259 - Carg10661-RA Car01g01376 142240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01376 452 Pfam AP2 domain 200 255 IPR001471 GO:0003700|GO:0006355
Car01g01376 452 ProSiteProfiles AP2/ERF domain profile. 200 263 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01376 Car09g00261 CCT
Car01g01376 Car05g00104 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01376 Car-Chr1:12078855 Car20g00058 Car-Chr20:321250 1.08E-79 dispersed
Car01g01376 Car-Chr1:12078855 Car12g00555 Car-Chr12:3699394 1.28E-131 wgd
Car01g01376 Car-Chr1:12078855 Car03g00809 Car-Chr3:6661442 1.85E-114 wgd
Car01g01376 Car-Chr1:12078855 Car05g00104 Car-Chr5:544015 1.13E-127 wgd
Car01g01376 Car-Chr1:12078855 Car07g00553 Car-Chr7:2818030 2.79E-14 wgd
Car01g01376 Car-Chr1:12078855 Car09g00261 Car-Chr9:1428446 1.24E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2892 PF00847 AP2 2.70E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01376 K09285 - csv:101212143 609.372