Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01380 ATGGATAATCTATCTCAGTCTTCAGGCGGACAGTTTCGACCAAATATCCCAGCACAACCAGGCCAGACGTTCATTTCCTCATCTGCCCCACAGTTCCAGTCAGCAGGGCAGAATATATCTTCTTCTAATGTTGGAATTCCAGCTGGTCAAGTCCAGCCACATCAGTATCCTCAATCAGTGCCACAGTTTGTGCCAAGGCCAAGCCACCGAGGCTATATCAATCCTTTGTCCCAGGGTATTCAAATGCCTTACGTTCCGACAAGGTCTCTTACTTCTGTTCCACCTCAGAGTCAGCAAAACGTGTCTGCACCAAATAATCAAATGCATGGTCTGGGTTCTCATGGACTATTTATTTCTTCACCATATACTCCAATGTCACAAATGCATGTACCTGTTGGATTTGGTAATAGCGAACCTTTGATGTCTTCTGTAAGCCAGGCTACAAACCCAGTCTCACAGATTGAGCAAGCTAACCAGCATTCTTCAGTTTCTACCGTAAACCTAGCTGCTAATGTTCCTGTCTTCAATCATCCATCTGATTGGCAAGAGCATGCATCAGCTGATGGAAAAAGATATTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAAAAGCCATTGGAACTTATGACACCACTTGAGGTAAACTTTTGGGGCTGGGATGTATATATAGTGGCTCCATGGAAAAGTATTCTTTGGGGTTGGGATAGAGCTGAGGCATCAACTGTGTGGAAGGAATTTACATCTCCATATGGAAGAAAGTACTATTACAATAAGGTGACAAAAGAATCAAAGTGGACCATGCCAGAAGAACTGAAGTTGGCTCGCGAGCAGGCTCAGAAAGAATCTGTCCAAGGAACACAAACAGATATGGCTGTTACAACGTCTCAACCTACACCTACTGTTGGTCTTTTCCATGCTGAAACGCCGGCAATTTCTACCATTAGCTCCAGCATTTCTCCAACTGTTTCTGGGGTTGCATTGAGTCCAGTTCCTGCTGCTCTTTTTGTTTCTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAATGACTGCTTTTGAAAGCCTTGCATCTCAAGATGTAAAAAATCCTGTTGATGGAACTTCTACGGAGGACATTGAGGAAGCAAGGAAGAGAATGGCAGTTGGAGGAAAAGTTAATGAGACTGTCTTAGAGGAAAAATATGCTGACGACGAACCATTGGTATTTGCCAACAAGCTGGAGGCAAAGAGTGCATTTAAAGCGCTTCTGGAATCTGTAAATGTGCAGTCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATCGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCTTTCCATGAGTATTTAGGACATAGAAAAAAGTTGGATGCAGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAATTCATCAAGATGTTGGATGAGTCCAAGGAACTCACATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAACGGTTCAAAGCCGTTGAACGTTCTAGATATCGGGAGGATCTTTTTGAAACCTGCATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTACTGAATATAGGGAATTTCTGGAGTCTTGTGATTACATAAAGGTGAGTAGCAAATGGCGGAAAGTACAAGATCGATTGGAAGACTATATACGTGAGTTGGAAAAGGAGGAAGAGGAACAGAAGAAGATACAAAAGGGACGTTTGCGAAGAATTGAAAGAAAAAACCGCGATGAGTTCCGCCAACTCATGGAAGAACACATTACTGCTGGTGTTCTTACAGCTAAGACTTTTTGGCGTGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCTGTTGCTTCAAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGAAGGAATTAAAAACTAAGTATCACAAAGAAAAGGCTCAGATAAAAGATGTGATGAAGGCAGCGAAGGTTACCATCACTTCATCATGGACATTTGATGACCTTAAAGCTGTCATTGAAGAGGGTGCTCCTCTTGCACTTTCAGATATAAATTTTAAGCTTGTATATGAAGATTTACTAGAAAGAGCCAAAGCAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTTTGGCTGATGACTTCTCAAGACTGCTTCACTTATTCAAGGAGATTTCAGCTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGACTACAGATCAATTGGGGAAGAGACCTTCGCAAAGGAAGTTTTTGAGGAATACGTAGTGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGGGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAATGCGAGGAAAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGACGTGTTAAGAAGGATGAAACTGTTAGCGAAAATGTAGATGCAAACGAAACTCGTGTCTACAGAGAAAAGAAAAGGGAAAAAAACAAAGACAGGAAACGTCGGAAGCGGCATCATAGTACCACTGATGATGGTGGTTCTAATAAAGATGAGAGAGAGGAGTCTAAGAAGTCTTGCAAACGTGGCAGTGACCGAAAAAAGTCAAGGAAGCACGCATATTCACCTGAATCAGACAGTGAGAGTAGGCACAGAAGACACAAGAGAGAACATCGAGATGGTTCATGTAGAAATGACGGACATGATGAACTTGAAGAGGGGGAGCTTGGAGAGGATGGGGAAATTCAATAG 2826 42.5 MDNLSQSSGGQFRPNIPAQPGQTFISSSAPQFQSAGQNISSSNVGIPAGQVQPHQYPQSVPQFVPRPSHRGYINPLSQGIQMPYVPTRSLTSVPPQSQQNVSAPNNQMHGLGSHGLFISSPYTPMSQMHVPVGFGNSEPLMSSVSQATNPVSQIEQANQHSSVSTVNLAANVPVFNHPSDWQEHASADGKRYYYNKKTKQSSWEKPLELMTPLEVNFWGWDVYIVAPWKSILWGWDRAEASTVWKEFTSPYGRKYYYNKVTKESKWTMPEELKLAREQAQKESVQGTQTDMAVTTSQPTPTVGLFHAETPAISTISSSISPTVSGVALSPVPAALFVSGPPAVVHANASSMTAFESLASQDVKNPVDGTSTEDIEEARKRMAVGGKVNETVLEEKYADDEPLVFANKLEAKSAFKALLESVNVQSDWTWEQAMREIINDKRYRALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFIKMLDESKELTSSTRWSKAVSMFENDERFKAVERSRYREDLFETCIVELERKEKERAAEEHKKNITEYREFLESCDYIKVSSKWRKVQDRLEDYIRELEKEEEEQKKIQKGRLRRIERKNRDEFRQLMEEHITAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLKELKTKYHKEKAQIKDVMKAAKVTITSSWTFDDLKAVIEEGAPLALSDINFKLVYEDLLERAKAKEEKEAKRRQRLADDFSRLLHLFKEISASSNWEDSKQLFEESEDYRSIGEETFAKEVFEEYVVHLQEKAKEKERKGEEEKAKKEKECEEKEKERKEKEREREKEKGRVKKDETVSENVDANETRVYREKKREKNKDRKRRKRHHSTTDDGGSNKDEREESKKSCKRGSDRKKSRKHAYSPESDSESRHRRHKREHRDGSCRNDGHDELEEGELGEDGEIQ 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12090529 12101115 + Carg10657-RA Car01g01380 142244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01380 941 MobiDBLite consensus disorder prediction 89 108 - -
Car01g01380 941 Coils Coil 532 552 - -
Car01g01380 941 Pfam WW domain 244 269 IPR001202 GO:0005515
Car01g01380 941 Pfam WW domain 178 206 IPR001202 GO:0005515
Car01g01380 941 ProSiteProfiles FF domain profile. 407 461 IPR002713 -
Car01g01380 941 MobiDBLite consensus disorder prediction 790 941 - -
Car01g01380 941 ProSiteProfiles FF domain profile. 596 659 IPR002713 -
Car01g01380 941 Coils Coil 776 828 - -
Car01g01380 941 Coils Coil 716 736 - -
Car01g01380 941 MobiDBLite consensus disorder prediction 1 55 - -
Car01g01380 941 Coils Coil 565 600 - -
Car01g01380 941 Coils Coil 650 677 - -
Car01g01380 941 ProSiteProfiles WW/rsp5/WWP domain profile. 238 271 IPR001202 GO:0005515
Car01g01380 941 ProSiteProfiles FF domain profile. 474 529 IPR002713 -
Car01g01380 941 ProSiteProfiles WW/rsp5/WWP domain profile. 175 208 IPR001202 GO:0005515
Car01g01380 941 MobiDBLite consensus disorder prediction 895 929 - -
Car01g01380 941 MobiDBLite consensus disorder prediction 790 851 - -
Car01g01380 941 Pfam FF domain 600 655 IPR002713 -
Car01g01380 941 Pfam FF domain 476 524 IPR002713 -
Car01g01380 941 Pfam FF domain 409 458 IPR002713 -
Car01g01380 941 ProSitePatterns WW/rsp5/WWP domain signature. 181 206 IPR001202 GO:0005515
Car01g01380 941 MobiDBLite consensus disorder prediction 864 887 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01380 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1285.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01380 Car09g00259 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01380 Car-Chr1:12090529 Car17g00588 Car-Chr17:5622246 3.69E-07 dispersed
Car01g01380 Car-Chr1:12090529 Car04g00409 Car-Chr4:2313393 0 wgd
Car01g01380 Car-Chr1:12090529 Car09g00259 Car-Chr9:1415422 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01380 Car_Chr01 FPKM 23.746342 28.272699 17.71986 18.779167 7.016207 4.708592 5.267144 44.989605 46.277767 45.831589