Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01382 ATGTCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAGTCAAGAGTGAGAACTTCTTCATCAACCCATGCCTCTCCAGCATGTGGGAAGCTTGATGGAGTAGCAACTTGGCTCATCAATGGCTTTGTCACAGCTTTCTTTGGATCCTTGGAACGATGCTCTTGTATTCGTATTGCCACAGCTGAGGACGACGGCGATGAGGCGAATGACGCTCCTTTGATCCCAAAAGATGTAAACCATCGACAGAACGGCGATGCAGCTGGCCGGAGGAGGGCCGGGAAAGGGAAGAAGTGTCAGCCACATTTCTATTCTGGAGAAGAAGCGGTCCGGTTTCATAGGCCCGTTTATGAATCTGGGTTATCGCCGGCCGAAAGCCAGGAGGTTTGGTCACAGTTTGAAGATCCGGGCGGGTCGATCTCAGGGTCACAAGGTTCGTGCCAAGCCGTCTCTTCGATCGACGGTGGGAGGAGAAGGAATCGAATGATGTCAAACCGAGAACCAGCGACGCGGCCCAGGTTGCGAAAGATGAGATATTTTGAGAGCCTGACGGTTGAAGCCGACCGGCTGAAAGTGAAGAATGAAGAGCTGAAAAGGCAGTTGAATTTGGTGTCGAAGCGTAGTTCCATGGTGCGAAGACAAAATGAGAGATTGTGGTCGGAATTTGTGGCGCTTCGAGCTCGGCTGTCCGAACTTCCCCGGGTTTCTGTTTCCATATAG 738 51.22 MSAITSTCSSFFSIRSNSMESRVRTSSSTHASPACGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDAPLIPKDVNHRQNGDAAGRRRAGKGKKCQPHFYSGEEAVRFHRPVYESGLSPAESQEVWSQFEDPGGSISGSQGSCQAVSSIDGGRRRNRMMSNREPATRPRLRKMRYFESLTVEADRLKVKNEELKRQLNLVSKRSSMVRRQNERLWSEFVALRARLSELPRVSVSI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12105325 12107375 - Carg10655-RA Car01g01382 142246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01382 245 Coils Coil 245 245 - -
Car01g01382 245 MobiDBLite consensus disorder prediction 141 159 - -
Car01g01382 245 Coils Coil 186 213 - -
Car01g01382 245 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 224 IPR004827 GO:0003700|GO:0006355
Car01g01382 245 Pfam bZIP transcription factor 163 221 IPR004827 GO:0003700|GO:0006355
Car01g01382 245 MobiDBLite consensus disorder prediction 73 104 - -
Car01g01382 245 MobiDBLite consensus disorder prediction 141 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01382 - - - cmax:111480829 244.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01382 Car09g00256 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01382 Car-Chr1:12105325 Car09g00257 Car-Chr9:1410587 7.46E-50 dispersed
Car01g01382 Car-Chr1:12105325 Car12g00551 Car-Chr12:3664524 1.23E-16 wgd
Car01g01382 Car-Chr1:12105325 Car05g00107 Car-Chr5:570595 6.88E-23 wgd
Car01g01382 Car-Chr1:12105325 Car09g00256 Car-Chr9:1407931 1.11E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g618 . Blo12g00994 . . . Bpe04g00147 . . . . . Cma09g00304 Car01g01382 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01464 Csa04g02497 . . . . . . . . . . Sed01g3816 Cmo01g01831 Cmo09g00304 . . . Car09g00256 . . Bhi09g03203 Tan01g4672 Cmetu09g0436 . . . . . . . . . . . . . Chy07g00206 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013825 0 2 0 0 1 1 2 1 1 1 0 0 1 1 1 2 0 2 0 1 0 1 1 1 1 1 0 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2893 PF00170 bZIP_1 1.40E-08 CL0018 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01382 Car_Chr01 FPKM 10.666373 12.099918 1.683589 1.531455 0.875851 0.398334 0.307246 0.0 0.0 0.0