Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01384 ATGTCATGGTTGGCTCTCTCCATTGCTAACACCCTTCGCCTTGACGACGAAGAAGATGAGCAGCACAACGACGTCGTATCTTCTTCTTCTTCTTCCACCATTCCCCGCAACCAGATGGAATCCCAATCCCAACCCCAACTCGACGACGAACCATTATCTCGCCGCGTCAAAGAGGACTTGACTGAATTCAAACAAACCCTAACCCGCCAATTTTGGGGCGTGGCCACTTTCCTTGCTCCACCTCCGCCTCCGCCGGAACCGGGGCCGACTCATCATCTCAACCCGGCGGAGGATCTGGTTGCCCCTCCCGATTGGAAGTCGTTCGAGGCGTCTAATCAGTCTGATCCATCGATCTCCGGGGACGAAGAGGACCTGACTGATCCGATTGAGGTTTTGAATATGCGTTCCAATCATGACGCCTATGCGAAATCGGGGATTTTACAGGAGGAATGCTACGAGGTGGATTGGGAAGGCGCTGTTGGGATCACTGATGAAGTGCTGACGTTTGCGACGAACATTGCAATGCACCCTGAAACTTGGATTGATTTCCCAATTGACGAGGAGGAGGACAACGGTGGCGTCGGGAAAGGAGGATATTGGGCGGGATCTATGAGCAACGAATCCCCCATACATCTCAAGGTGAAGGTCTTTTGGCCTATCACAATAAAGAGTGAAGTCAAGATAGCTTTAAGTGGCTCGTTGGAGGTGGACATTAAGCATAGTGAATTGAAATTAGAGACTGATCAAGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACATCTTGCTCCTAGATTGGCTGCTCTCAGATTTGAGCTCTGTCCTTGCCATATGAGTGAGAGTTACTTTTGGAAAGTCTACTTTGTTCTCCTGCATTCAAGACTCAATAAACAGGATGCTGAGGCTTTATCTACTCCACAGGTAGCAGAAGCCAGATCAATGTGGATGCAGGAATTACAAAAGAAGACCAAGCCAGAGACTTTCTGGTGTGGAAGAGACACTTTTGAATTAAAAGACAGCACTGATTTGTTGCAGGAAGATGATAGCTCCATGGGCCTTGAAACTCATTCTGTATCTACGCTGCCTTGGACATTTACATCTGAGCCAAGCATGTCGTCTATGTCGAGCAATTGTGAGACAGAAAAATACCAAATAGAGACTTCTGAAACACAATTCATTGATAAGTCCGTCATCGTTGAAAAACCTATAATTAAAGATGAGGATAAAAACTCAACAATTGAGTCTTCTTCAAAATTCCTTGTTCAGAACTACGACGACGAGTCAGATAATGATTGGCTAGAGGAAGACTCTGGGACCATCCTCCCTCTGGGGTACGACGAAGATATTTCTTTCAGTGATCTCGAGGATGATGATATGGTTCTGCCTGCTAAGAGTGGAGATTCATTCATCGGAGGCTGTCTGACAGAAGAAAGCGCTAAAAACAGCCAAAGGAGCCACCGAATTGAGGCAGAAATTGAACCGAAGCGTACTGGCCACAATCACTCTGGATGA 1527 46.63 MSWLALSIANTLRLDDEEDEQHNDVVSSSSSSTIPRNQMESQSQPQLDDEPLSRRVKEDLTEFKQTLTRQFWGVATFLAPPPPPPEPGPTHHLNPAEDLVAPPDWKSFEASNQSDPSISGDEEDLTDPIEVLNMRSNHDAYAKSGILQEECYEVDWEGAVGITDEVLTFATNIAMHPETWIDFPIDEEEDNGGVGKGGYWAGSMSNESPIHLKVKVFWPITIKSEVKIALSGSLEVDIKHSELKLETDQDFEMSDAQKEHAFTIEHLAPRLAALRFELCPCHMSESYFWKVYFVLLHSRLNKQDAEALSTPQVAEARSMWMQELQKKTKPETFWCGRDTFELKDSTDLLQEDDSSMGLETHSVSTLPWTFTSEPSMSSMSSNCETEKYQIETSETQFIDKSVIVEKPIIKDEDKNSTIESSSKFLVQNYDDESDNDWLEEDSGTILPLGYDEDISFSDLEDDDMVLPAKSGDSFIGGCLTEESAKNSQRSHRIEAEIEPKRTGHNHSG 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12111731 12115895 - Carg10653-RA Car01g01384 142248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01384 508 MobiDBLite consensus disorder prediction 25 49 - -
Car01g01384 508 ProSiteProfiles BSD domain profile. 248 300 IPR005607 -
Car01g01384 508 MobiDBLite consensus disorder prediction 482 508 - -
Car01g01384 508 MobiDBLite consensus disorder prediction 485 508 - -
Car01g01384 508 MobiDBLite consensus disorder prediction 77 91 - -
Car01g01384 508 MobiDBLite consensus disorder prediction 15 51 - -
Car01g01384 508 MobiDBLite consensus disorder prediction 75 123 - -
Car01g01384 508 Pfam BSD domain 248 304 IPR005607 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01384 - - - csv:101202841 450.284
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01384 Car09g00254 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01384 Car-Chr1:12111731 Car11g00402 Car-Chr11:2243945 2.95E-15 dispersed
Car01g01384 Car-Chr1:12111731 Car03g00816 Car-Chr3:6691148 7.94E-55 wgd
Car01g01384 Car-Chr1:12111731 Car07g00559 Car-Chr7:2848578 3.20E-47 wgd
Car01g01384 Car-Chr1:12111731 Car09g00254 Car-Chr9:1399455 5.93E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01384 Car_Chr01 FPKM 15.133517 14.26586 77.235115 86.284897 11.723082 14.269784 17.224136 11.46183 11.340842 10.525746