Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01385 ATGACTAAGGCGATGGTGAAGAAGAAGAAGAAGGGGTTTCTTTTGACTAAGGAAAGGGTTCAGTTAAAGGAAGAAAAGGATGTCCCCATTCGCCATTTTTGCTGCTTATTCATTTGTTCTTTTGAGGGTTTTGTGAAAATGCCGATGTACCAGCCTTCTTCCGGTCGGAGGAGAGAGGCCGATTCGGAGATGGGTTTGGGTGGTGGTGGTGGGGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGCGGCGGTGGGTTAATCTGCGACGGTGGAGGGGCTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTTTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCCAATATCCTCAAATGGTTTTCTCTTGGCCATTTCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTGGCAGAAGTATTTGGCGATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGACACTTTGAAGAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGACAAGTTGTCACTTCGAATTCTTCGGCGAAGAAAACCGTGGAGGACAATGGCGGTCTTGGTTCGATTTTGTCTTTGTTAGGTCCTTTCACATCCCATGCGGTTGGCTCCGAAGTCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGAAGAAACCTTGTTCAACCTGCAAAGATTTCATTAATGGTGGATATGTTGAATGAGGGATCCACTGAGACTAAAATCAACTGCACCAGATTGATTGAAACTTTTCTGGATGGTGATGATTGCGGGGCAGACACTGTCTCGAGTTTTAGTCTCTTGGTTGGATTGCTGAGATTAATCAAAGAGAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAGATTGCTAAAAGCTCTGTGCTGCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATCCCACAACTGATTGAAATTCTCCCGAATTTCGACCCGGAATGTTTGGAGCTAGCTCTTCATGTATTAGACTCGCTTTCGTCCCTGTCGGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTGAAGTTGTTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTTGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTGTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1500 46.53 MTKAMVKKKKKGFLLTKERVQLKEEKDVPIRHFCCLFICSFEGFVKMPMYQPSSGRRREADSEMGLGGGGGGQVLDVETAVKDGILGGGGLICDGGGAEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVTSNSSAKKTVEDNGGLGSILSLLGPFTSHAVGSEVIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETFLDGDDCGADTVSSFSLLVGLLRLIKEKKHPNGVLAGLRLLKALCCQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12117447 12119206 - Carg10652-RA Car01g01385 142249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01385 499 ProSiteProfiles U-box domain profile. 114 188 IPR003613 GO:0004842|GO:0016567
Car01g01385 499 Pfam U-box domain 115 185 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01385 Car05g00111 CCT
Car01g01385 Car09g00253 CCT
Car01g01385 Car12g00549 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01385 Car-Chr1:12117447 Car04g00454 Car-Chr4:2568607 7.33E-43 dispersed
Car01g01385 Car-Chr1:12117447 Car12g00549 Car-Chr12:3650535 0 wgd
Car01g01385 Car-Chr1:12117447 Car05g00111 Car-Chr5:584617 0 wgd
Car01g01385 Car-Chr1:12117447 Car09g00253 Car-Chr9:1395177 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01385 - - csv:101223113 783.482