Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01394 ATGGAAAGTTATTTGAATGAGAATTTCGGGGACGTTAAGCCGAAGAACTCGTCGGAAGAAGCGCTTCAGAGATGGAGGCGGCTTTGCTGGTTGGTGAAGAATCGTAGAAGAAGGTTTCGATTTACTGCTAATCTCTCTAAACGATTTGAGGCTGATGCTATTAGACGCTCCATTCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCAGCGCTTCAGTTCATCAATGGGTTGGATTTGTATCCTGATTACGTTGTGCCTGAAGAGGTCAGACAGGCAGGTTTCGAAATTTGTGCAGATGAAGCAGGCTCCATTGTTGACGGCCGTGATGTGAAGAAGCTGAAAATTCATGGGGGTGCAGAGGGTATTGCAACTAAGCTTGCTACATCAACGGAGACGGGCATCTCTACTACAGACCATTTGATAAAGAAAAGACAAGACATTTATGGAATTAACAAATTCACCGAAAGCCCATCTCGAGGATTTTTGCTCTTTCTTTGGGAAGCTCTCCAGGATACAACTCTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGCGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTTGCGAGTATCTTACTTGTTGTATTTGTCACTGCTACCAGTGACTATAGACAATCGCTTCAGTTCAAGGATTTGGACAAGGAAAAGAAGAAAATTGCGGTTCAGGTTACCCGAAATGGGTTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTTGTTTCAGGGTACTCTCTTCTGATAAATGAATCTAGTTTAACGGGTGAGAGCGAGCCAGTTAACGTAAGTTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAGGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTAGGCATGAGAACCCAATGGGGAAAACTGATGGCCACTCTTAGTGAAGGAGGAGATGACGAGACTCCTTTGCAGGTAAAGCTAAATGGGGTGGCAACAATTATTGGTAAAATAGGCCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCACTCGCAAGCTACGAGAAGGGTCTTACTTCAGCTGGTCCGGAGATGAAGCAATGGAAGTTTTGGAATTTTTCGCTGTTGCCGTAACTATTGTTGTGGTTGCTGTGCCCGAAGGGCTGCCTTTGGCGGTGACACTGAGCCTTGCTTTTGCTATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTAGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGTAGTGACAAAACTGGGACATTGACGACTAACCACATGACTGTTGTGAAAGCCTGCATCTGCACTAAGGTCAAGGAAGTTGGCAATTCTAGTAAGTCTTCTGATTATCGTTCAGAACTTCCCGACTCCGCTGTCGGTATTTTACTGCAATCGATATTTAACAACACCGGTGGAGAAATCGTCAAGAACAAAGATGGCGAGAATGAGATACTTGGGACGCCCACCGAATCTGCTCTTCTGGAATTCGGCCTCCTGCTTGGTGGGGATTTTCAGAAAGAACGCCAAAAGTCAAAGATCGCGAGAGTCGATCCCTTCAATTCTGTGAAGAAACGAATGGGTGTTGTTTTGGAGCTCCCAGCCGGTGGCTTCCGCGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGCGACAAATTTCTTGACTCGAACGGTGAGGCAGCTCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGAAACGATCGAAGAATTTGCGGGAGAAGCTCTTCGAACATTGTGCTTGGCTTACATGGACATTGATGGTGAGTATCAGTCTGAAAGTCCGATTCCCATGAGTGGCTACACGTGCATAGGAATTGTTGGTATTAAGGATCCCGTTCGTCCGGGTGTTAAGGAGTCTGTTGCGATTTGCAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACCGCAAAAGCAATAGCCAGGGAATGTGGAATCCTGACTGACGATGGCATGGCAATTGAAGGTCCTGAATTCCGTGAGAAGGAGGAAGAGTGGAGTGAAATAATACCAAAAATTCAGGTCATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTTGTTGCAGTGACTGGGGATGGCACAAATGATGCTCCGGCGCTCCATGAAGCAGATATTGGCTTAGCTATGGGCATTGCTGGGACTGAGGTGGCAAAAGAGAGTGCTGATGTAATAATTCTCGATGACAACTTCTCTACAATTGCTACTGTTGCCAAATGGGGACGTTCAGTTTACATAAACATCCAGAAATTCGTTCAGTTTCAGCTAACTGTGAATGTGGTTGCCCTCATCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTATGGGTCAATATGATAATGGATACACTAGGAGCACTTGCATTGGCAACTGAACCTCCTACTGATGACTTGATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATCAGCAACGTGATGTGGAGAAATATCTTGGGGCAGTCAATATATCAGTTTGTAATAGTTTGGTTTCTCCAGACAAGAGGGCAGGCTCTTTTTCATCTTGATGGCCCAGACTCTGAATTGATACTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAGAAGATAAATGTGCTTGAAGGAATATTGAAGAACTATGTCTTTGTGGCAGTTCTCGCTTGCACTGTACTTTTCCAGATCATAATCATCCAATTCCTGGGGACATTTGCAAACACCTATCCTCTAAACTCCCAGCAATGGTCTGTCACCGTGTTGTTTGGATTTCTTGGCATGCCAGTTGCAGCAGCGTTGAAGATGATTCCGGTAGGATCACACTGA 3060 44.93 MESYLNENFGDVKPKNSSEEALQRWRRLCWLVKNRRRRFRFTANLSKRFEADAIRRSIQEKFRVAVLVSQAALQFINGLDLYPDYVVPEEVRQAGFEICADEAGSIVDGRDVKKLKIHGGAEGIATKLATSTETGISTTDHLIKKRQDIYGINKFTESPSRGFLLFLWEALQDTTLMILAFCAVVSLLVGIAMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVSCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFTRKLREGSYFSWSGDEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICTKVKEVGNSSKSSDYRSELPDSAVGILLQSIFNNTGGEIVKNKDGENEILGTPTESALLEFGLLLGGDFQKERQKSKIARVDPFNSVKKRMGVVLELPAGGFRAHSKGASEIVLASCDKFLDSNGEAAPLNEESINFLKETIEEFAGEALRTLCLAYMDIDGEYQSESPIPMSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGMAIEGPEFREKEEEWSEIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSIYQFVIVWFLQTRGQALFHLDGPDSELILNTLIFNAFVFCQVFNEISSRDMEKINVLEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWSVTVLFGFLGMPVAAALKMIPVGSH 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12157382 12161692 + Carg10643-RA Car01g01394 142258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01394 1019 Pfam E1-E2 ATPase 237 432 - -
Car01g01394 1019 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Car01g01394 1019 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Car01g01394 1019 Pfam Cation transporting ATPase, C-terminus 840 1014 IPR006068 -
Car01g01394 1019 Pfam Cation transport ATPase (P-type) 515 593 - -
Car01g01394 1019 Pfam Cation transporter/ATPase, N-terminus 119 186 IPR004014 -
Car01g01394 1019 Pfam haloacid dehalogenase-like hydrolase 651 769 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01394 Car09g00244 CCT
Car01g01394 Car09g00244 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01394 Car-Chr1:12157382 Car05g00682 Car-Chr5:4528221 0 dispersed
Car14g00494 Car-Chr14:2712837 Car01g01394 Car-Chr1:12157382 7.60E-11 dispersed
Car15g00735 Car-Chr15:4100980 Car01g01394 Car-Chr1:12157382 0 transposed
Car01g01394 Car-Chr1:12157382 Car03g00827 Car-Chr3:6730670 0 wgd
Car01g01394 Car-Chr1:12157382 Car07g00570 Car-Chr7:2892947 0 wgd
Car01g01394 Car-Chr1:12157382 Car09g00244 Car-Chr9:1342769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01394 K01537 - csv:101221694 1868.59