Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01395 ATGGATGATGAGATTGTCGATGAACACTCATTCATTGACATTGGAAATGGAAGCAGCCCAGCAGAGGATGACTATGTGGATACGTTACTTGCAAAAGAGATGAGTTTCGGGTTTAGAAATGATAAATCTTTGGTGTTTGGGAACTGGGTCAAATGCGCTCGTTTGGAAGCAATTGCATGGATTCTCAAAACCAGAGCTGTGTTTGGATTCGGTTTCCAGACCGCTTATCTTTCAATTATGTACTTCGATCGGTTCCTTTCCCGGCGGGCCATTACTAACGAGAAGGTATGGGCAGTTAGGTTACTGGCAGTGGCTTGTCTTTCTTTAGCGGCGAAAATGGAGGAATTGAAGGTTCCAGCTCTTTCAGAATTTCCAGTGGAAGATTTCAACTTTGAAAGCAAAGTAATCCAAAGAATGGAGCTTTTGGTGTTGAACACATTGGAATGGAAGATGGGTTCAACAACTCCCTTCTCTTTCATTCCTTATTTCATATCTAAACTATCCATTGAATCCCCACCAAGCAATAAAGTTTCTCAGATTGTTGAACTCATCTGGGTTTTGATTAGAGAAAGAAGCACAGAAAACCATCGGCCTTCTGTAGTAGCAGCAGCCACAGCCATTTTAGCAGCAATGGATGACAGATTAACAAGGAAAGCCTTGGAAATGAAGATGAACACCATTTCTCAATGTAGATATCTCGAAATAGAAGATGTGGTTTCATGTTACAATCTGATGCAAGAACTGAGATTAGAAAAATGCAGAGAAGAAGCAGAATGTTTGAAATCACCAGATTTATCACCAACCCAAATGAAATCAATGGATTGTTCATCAAATTCATCAGTAACATCAGCGATTGCATCAAAAAGAAAACGGCTAAACTTCAGTAACTGTGATGAAGAATGTGGTGTGGGTGAAGCAAAGCGGCTCCGTTAA 933 40.51 MDDEIVDEHSFIDIGNGSSPAEDDYVDTLLAKEMSFGFRNDKSLVFGNWVKCARLEAIAWILKTRAVFGFGFQTAYLSIMYFDRFLSRRAITNEKVWAVRLLAVACLSLAAKMEELKVPALSEFPVEDFNFESKVIQRMELLVLNTLEWKMGSTTPFSFIPYFISKLSIESPPSNKVSQIVELIWVLIRERSTENHRPSVVAAATAILAAMDDRLTRKALEMKMNTISQCRYLEIEDVVSCYNLMQELRLEKCREEAECLKSPDLSPTQMKSMDCSSNSSVTSAIASKRKRLNFSNCDEECGVGEAKRLR 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12164504 12166001 - Carg10642-RA Car01g01395 142259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01395 310 CDD CYCLIN 54 144 IPR013763 -
Car01g01395 310 Gene3D - 53 152 - -
Car01g01395 310 Pfam Cyclin, N-terminal domain 53 151 IPR006671 -
Car01g01395 310 Gene3D - 153 236 - -
Car01g01395 310 PANTHER CYCLINS 25 275 IPR039361 -
Car01g01395 310 ProSitePatterns Cyclins signature. 54 85 IPR006671 -
Car01g01395 310 SMART cyclin_7 59 145 IPR013763 -
Car01g01395 310 Pfam Cyclin, C-terminal domain 155 252 IPR004367 -
Car01g01395 310 SUPERFAMILY Cyclin-like 137 253 IPR036915 -
Car01g01395 310 SUPERFAMILY Cyclin-like 21 151 IPR036915 -
Car01g01395 310 PANTHER CYCLIN-D5-1 25 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01395 K18811 CYCD5; cyclin D5, plant - csv:101209688 538.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01395 Car09g00243 CCT
Car01g01395 Car09g00243 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01395 Car-Chr1:12164504 Car04g01638 Car-Chr4:9440369 1.90E-40 dispersed
Car01g01395 Car-Chr1:12164504 Car07g00578 Car-Chr7:2925669 2.02E-44 wgd
Car01g01395 Car-Chr1:12164504 Car09g00243 Car-Chr9:1338747 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g655 Blo01g01496 Blo12g00986 Bda01g00589 Bda03g00183 Bpe02g00451 . . Bma01g02248 . . Cma01g01787 Cma09g00289 Car01g01395 . . Cpe06g00199 . . . . . . . . . . . . . . . . Cone7ag1340 . . Lsi04g01489 Csa04g02476 . . . . . . . . . . . Cmo01g01845 Cmo09g00280 . . . Car09g00243 . Cpe02g00219 Bhi09g03230 . . . . . . Cla05g02105 Cam05g2257 Cec05g2278 Cco05g2318 Clacu05g2254 Cmu05g2116 Cre05g2240 . . Chy07g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005430 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01395 Car_Chr01 FPKM 96.016937 103.855598 121.330215 127.719376 76.447273 61.435478 75.759048 100.901749 101.620781 113.204124