Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01397 ATGGCTTCGGCGGAGCAGCCTCTCAAGAAGCGCCGGAACTACGTACCACCCGCATCAGAGCCACCGCCACCGCTACCGCTACCGCAAACCCTAGCGCTGGACCAGACATCCGTCGCTCCACCGCCTCCTACTCCACCGCTGCTGTCCCAAGCCGAAATCCTCCTCAGGAGAAGGAACAGAGATGATATTAGAAGTGTCTATGACTGTTTTAAGCGAATTAGGTTTTTTCTTTCCCAGAAAGAGAAGGGCGCTCCCACACCTGATATTGAGCAGGCATATCTTTCTCTCATCACTGCTTCGAGAGGGTGCGCGAGTGTAAAGCGTATTGTAGCTGACTTTATTCCTCGGTATGCACCTCATTGTCCAACTGCTCTTGAAGCTGCAACAAAAGTTATCATCAATATGCACAATCAGAGCTTGGAAATAATAACTAATGGGGAGGATGTTGATAATGTTGCATTTGAGACAGCTAGGGCTTGTATTATTGGTTTGGTTGTTATTTGTGCTGCTGTAATATCTAAGGCACCTACGTCATCTGTCATCAGAGGCATTTGCTCTGAAGTCTTTCAGAATGTTTTCACCTTCTTTGTGTCATCTTTTGAGGGTAAAGATATCTTTCAGATTGTGGATGAAGAAGCTCTTAAAATTCTCTACTCTGCAGATTTTTTCACTGAGTTGAAGCAGAAATATACTGATGAAAATAGTTTGCCTGTGATTAAGCTATCCAAGTTACGTGCTATCAGTTTCCTCTGGCTGTTTTTTCATTACCCTAAAAACTTAACTGCAGCTTGTTTTGAGCTTTTCAATATGTCTGCCGAGGGAATTCATAAGGATGGCCTGTATTTCCTGACTCAGATTATACTTGGGATCGATGATGGTATCACCCATCATTTGGATAAAGGAAATGACAACAGAGCAAGCCTCAAATGTTGCAAAGATGATGTTAAGGAGAAAGTTTCAGTCAGTAGCCTCATCTCTGTTGATGCGTCATCTGTTTCAAGGAACTGCATGTTGAGCTTGGTCCTTGGAAGCGATCAATCATTTCGAAACTGGATGTTTACACAGTATAAGAGGCTCTGTGACCTGCCGTCCTTTAGAGCTTTAGCAGATGTAAGATCTGCCCTGGAAGGAATTTTTGAATCATTTTCTGAGTTAATGAACAATGAAGATAGTCAAGTGAACATCGATGAGGAAATTTCTGATTCCTTAATGCATACCCGTCATAGGAGTGAAATTTCCATGGAACTCTCTGATAAAAAGAGAAAATTGAGTCATTGTGATTCCGTTGAAGATGGTGTCAATGACAAAGTTTATGGTCAACATCGTTCATCAATTCCTCTTGAAGGCAAGCACACCACATGTTCTGATTTGGATACTGGTAACTTGAGACCCATGGCCTTTGAAGTTCGGGAGCCAGGAGGTTGGCTACATGGCAGTTTGCCCCAGTCACAGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCAGTAGACCTGCAGAGCAATTCTCTTGAATGTACAAAGAGTTCAACTGATGAGAATCAAGTTTCAAGTGTCGATCGCAACTTTCCTGCTCAGAGATCATCTACTGGAGATGTCAATAATGATCTTGTGCCTCCTAGACATCAACTATCAGTGCCATGTAGTTCTACAACTTCTCAGAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCCTCTAAACAATTATGGGTGGGTCTTTTAGGTCCTGATGCATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGAACATTTTTTCTTCTTTCCATTAAAAGGGTTTGCAGTAGTGGAGTATAGTCACATCAATTATGCAATAAGGGCACGTGAATATATGCGTGGACAATTTCAGTGGTGTGTAAAATTCATGGATATTGGTTTAGGGACTAGGGGTTCCACCCACGGGGTTGCAATTGGTTCCAGTTTGCATGTTTATGTTGGAAATGTTTTGGGCCACTGGGTGAAGGATGAGATTCTGCATGAGACAAGGAAAGTGCTTAACAAGGGCCCATACGGGGTCTCTGATCTTAGCAGTGAGGGAGCATTGCTGATGGAATTTGAGATTCCCGAAGATGCTGCAGTTGTAATGGCGCATCTCAGACAACATCGTAGGGAGAAGTACATTCACTGGCCACCTTCAAATTCAGGACAAACTAACATCGCTGCTCCTTATTTAGATAGTGGAAGATCTTCTTGTGCCCCTCCTGGTGGTAGCATCAGAAGTAACAATCCTTCAAACTTGTCCAGTAGTATGGTTGGGTCACCTCATGCTCCAATTGTCCCTGAGAGTCCCAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTGCTCTACACGCTGCGTGCAAAATACAACATCAATCAAAACTCGAGTTACTTTGAAAGCTACATGTCTGGAGGGTGCAACACTTCCATGAGGGAAGACGACAGAAATCCTACTAGCACTCTCTGGGTTTCTTTCCCAAATTTTAGTTCTCCTTTTGTCACCGATGAGGAGTTGATGAAGATCTGTAATCTTGCCATCACCAATACTGGGTCTGTTGTCAGGATGACTCGAGCAAGTGTACAGGTGGGCGGTGGTTGGTTTGTTGAGTGCAGTAGTGTGGATGCTGCAATCACGGTCTTGAAGAACCTCCGTGGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTAAACCAGGAAGGTTCCATACAACACCTTTTATGAGGAACCATGATAGTTGTGCTATGGAGCATCCATCTCCTAGAGTATTACATGAAAATCGTGCAATGCCTCAGCAAGGTGGATATTCATATCAGTCAAACTGGGCTCCTTCTGGTCATACAGAGATTTCTGAAATAGGTGTCAGAAAGACTGATGCTTACGAAAAAAGCGTGCTGATAGATCATCCACAAGGTGGCCACATAGTGTCTGGAGGTATTCCATGCTTGCCCATATCAACAATGGGGCCTCCCGCTCCACCACCTCCACCGCAGATTCAGCCACCTCCATTTGTTCAATCTCCATACCCTCCTCCAAATAGTTCTTGGGATGCAAGGGGTTTAAACCATCCTTTGCCTTTAAATCCAATCTCACCAGGTGTTATGCCTAATACATTCCCTGGTAATTCTGTTGCATGCTCTCCTTTTTTACCTGCTTCTGTGACACCACTTGCTCAGATACAAGGAGTTCCAATGCAGCAGCAGCATCTAGACCATGTTTTTCCCCATCCTGTTGTTCCGCCATCAATATCATCTCTTCCACCTCCCCAGCCCGAGATGCCTCCTCCCATGCCTCCATCTCCACCACCATTGCCTCACTCACAACCACCTAATATTCCTCCTCCACCCAGTTCTCCTCCGCCTCCACCTCCACCCCTAGCTGCCACTGGAACAAGTGAAGTGGAAAGTAGTAGCCAGCCTGTCCAGTATCAATGGCAAGGTGCCCTGTGTAAAAGCGGGGTTCAGTACTGTACAATTTTTTCAAAAAGAGTGGATTCACATACTTGCAAATACTTCAATGCTGGTCCAGAACCTTTCGAGTGGCCAACAAAATTAGATATGACCAAACGTACAGATTTCAGGCATGTGAAGTCGACATTCACTAGCACTTCACCAAATAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGGTGGAGATCATAAAGGATTCCAAGATTTTGTATCATATTTGAAGCAGAGGGATTGTGCGGGAGTAATAAAGATACCGGCCACTAAATCGCTATGGACTAGGCTTCTCTTTATACTTCCATATTCACAGGACTCGTGTTCTCTTCTCTCAATTCCACCAGGTCCGCCAGATAGTCTGATTGGTTTGGTTCTTCCGAAAGAAACAAACTTCGAATGGATCCCGATGCCGCTCGTCAGAGGATTCCAAATTATTACATGGCCAAAGAAAGTAACTCCTCGTCCTCCTCCTCTTCCTCCCTCCGCTTGGCGCGCTCTTCTTCCTTTCCAATCACCAACGCACTCATCTGAATACAGAATGTCGAATCGTTGCAACCAAGATGGAAACAAGGGTTTAAGGAAAGACCAGAAGAAGTACATCCCCAAGAATCAAAATCAATCTTCAAAACAACTCCTCAACCCTAAACCTACCCTCTCCGCTTCTTTCAGACATTCGCTCCCCAAGTCATCCGATTCTGCTGCTGTAAGCACTGCTGCCGCGCCTTCAATGAGTAGGATTCAGATGAGTGTGAGTGGAGATTGGGTGTCTAGCAGAGTTAGTGGTGGTAGTTTCGTGAATTACTTGCCAGAGGACGAGGCCGTTGCCTCTGGTCTTCGTGCTGAAGAAGGAGCCTTGGATCCGGTGGAATCTCAAAGAGTCGTAGACCTTTTGAATAGAGAGCTGTCTCGGCTGCTAAAGTTGAGTGCTAAAGAGTTTTGGACGGAAGTGGCTAGGGATACATCCTTGCATGAATTTCTCGATAGCTTCCTAAAATTCAGGAGTAGATGGTATGATTTTCCACATCGTGGAGCAAATGGAATAGTTGCAGGGGTCATCATTGGAGAGTTTGAATTATGCCGCCGTGTTTTCATGGTATTGTATCGCGTGTCTTCCAATAGGGATTCTGGAGCGCGAGCTGCTGATAGTCTCAGTATAAAAGATCATGGAGTCCTCCTGCAGGGAAAAAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATAATCACGAGAACGAAGATCTAACTAGAATACTGGTTGAGAATGCTATAAAATCCCAGCTTAGTATTCATGAAAATTTACTATCAGTTATATCTCACTTCCTCAGCATCGTCTCTATGATGCATCAAAGGTGCAATTCATCTCTTGAGACTCTCATCTCCACCAGTAGCCATGAGCACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATTGATTTTATCAATGATGCAATTGTCACTCTGGACTCTTTCGTTGCTGCATACAGACTGGCAGCCATATTCTTCTCCTCTGCTGTTGAAGTGAGCTGCGGAAATGAGGATTTACTCGGAACTCTTGCAAGGTTGCATGATATACTGCTTCCATCTTTACAGCAGGGTTTCCAAATTGTCTTTGTGGCCCAAGAAGATGATATGGTGTCTAATGTTGCAAAAAGTTTGAAAATGTTAGCATTAAGAATTGTGAGTCTTGGTTGGAAACTGCTGGAAATTTGCTATCTAGGAGATGAAGTGTTTGGAAAAGACCTCCCTGTTCCAGTCTCTATGAAGATGTTCCCAGCATCTGTTGAAGACCCTGTCATAAGAGCAGATATCTTGATTCAAACTTTGAGAGAGATCCATGGAATCTCGCAACAGGTTCCAGATAAACAACTTGGTCAAACATTTCTTCAGCATATGGAAAAGAACCACTCCATAATTAACAGAATCAACAGTTTACGAAACAATGGATGGATTTATGTCGATGATGAACAATTTGATCATCTATCAACAATAGTTATGTGTATCCCAACATCCAATACTAAGGATCCATCTCTTTCTAAGACCCCTGTGATGAGCCACATATCAGAAGTAGATGAAGATGCTGCAATGTTGGAGTCGAAAATCTGTCAAATAAAGGATCTTTTCCCCGAGTATGGCAATGGATTTCTAGCTGCATGTCTGGTAGCTTATAATCAGAACCTGGAAGAAGTGATTCAACGAATCCTTGAGGGGACTCTTCATGCCGATCTCCAGTCCTTGGATACTTCCTTAGAAACAATGACAGTGCCCAATTCTAGTACGACCGCTAATGGTAGGAATGACAAAGGTAAAGGAAAACTAATTGAGTCTTCGACAGTTGCCTACACTGACCAAGTATCTGGATGTAAAGAAGATATACCGATTGAAGGCCCTTCAGTCTCATCAGCTTCAGCTGGTAGATATGTTCGAAAGTCCAAAGATGGCATGCCGAACTCTCAGACCCTTGATAAAACAGCTACAGAAGATAATGAAGACTTTGTGGGTCGAAAGCCGAGTGCAGATTTGGGTGACTCTTCGAACTCAACAACTGCAGGTTCAGCGCCAAGTGCGCCCAACCCAAAGTGGGGATCTAGAAGACAACCACAATTCTACGTCAAGGATGGTAAGAATTATAGTTACAAAGTAGCAGGTTCGGTGGCAGTTTCCAATTCTGAGGAGGCATCCTTAGTTACTCAAGCTCAAAAAGAACTAATTTATGGACTTGGCCGCGGAGGCAACTTGCCCCTCGGAGCAGTAAGAAAGCTGACAGAGTCGGAGCAGGATAGCCCACCTGATGTTTCTGCAGTAGATCCAAGAGATAATGGACGCAAGTCCTGGGGCAGAGGAAGGAGGGAAGGTGGAAATGGAACAGCTCCAAGCGTTCCAGAAGAACAAGGTAAACAACCAAATGTGGCTGAGGTCTCAGACAGGGGCGGGTGGGGCGGCAACAGAGGCCGAGGAAGGAGGGGAGGGGGTAACCATCACAGGAAGGACAGAGCCATGAATAAGCATTTTGCTGGACTGCAGGGTTTCTAA 6546 44.33 MASAEQPLKKRRNYVPPASEPPPPLPLPQTLALDQTSVAPPPPTPPLLSQAEILLRRRNRDDIRSVYDCFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCASVKRIVADFIPRYAPHCPTALEAATKVIINMHNQSLEIITNGEDVDNVAFETARACIIGLVVICAAVISKAPTSSVIRGICSEVFQNVFTFFVSSFEGKDIFQIVDEEALKILYSADFFTELKQKYTDENSLPVIKLSKLRAISFLWLFFHYPKNLTAACFELFNMSAEGIHKDGLYFLTQIILGIDDGITHHLDKGNDNRASLKCCKDDVKEKVSVSSLISVDASSVSRNCMLSLVLGSDQSFRNWMFTQYKRLCDLPSFRALADVRSALEGIFESFSELMNNEDSQVNIDEEISDSLMHTRHRSEISMELSDKKRKLSHCDSVEDGVNDKVYGQHRSSIPLEGKHTTCSDLDTGNLRPMAFEVREPGGWLHGSLPQSQDPLSKHDHLSYAKTSVDLQSNSLECTKSSTDENQVSSVDRNFPAQRSSTGDVNNDLVPPRHQLSVPCSSTTSQSLWFSDGDPSAMDIFSASKQLWVGLLGPDASEAHIRYQFERFGYIEHFFFFPLKGFAVVEYSHINYAIRAREYMRGQFQWCVKFMDIGLGTRGSTHGVAIGSSLHVYVGNVLGHWVKDEILHETRKVLNKGPYGVSDLSSEGALLMEFEIPEDAAVVMAHLRQHRREKYIHWPPSNSGQTNIAAPYLDSGRSSCAPPGGSIRSNNPSNLSSSMVGSPHAPIVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFESYMSGGCNTSMREDDRNPTSTLWVSFPNFSSPFVTDEELMKICNLAITNTGSVVRMTRASVQVGGGWFVECSSVDAAITVLKNLRGCPGIFLRIEFSKPGRFHTTPFMRNHDSCAMEHPSPRVLHENRAMPQQGGYSYQSNWAPSGHTEISEIGVRKTDAYEKSVLIDHPQGGHIVSGGIPCLPISTMGPPAPPPPPQIQPPPFVQSPYPPPNSSWDARGLNHPLPLNPISPGVMPNTFPGNSVACSPFLPASVTPLAQIQGVPMQQQHLDHVFPHPVVPPSISSLPPPQPEMPPPMPPSPPPLPHSQPPNIPPPPSSPPPPPPPLAATGTSEVESSSQPVQYQWQGALCKSGVQYCTIFSKRVDSHTCKYFNAGPEPFEWPTKLDMTKRTDFRHVKSTFTSTSPNKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKSLWTRLLFILPYSQDSCSLLSIPPGPPDSLIGLVLPKETNFEWIPMPLVRGFQIITWPKKVTPRPPPLPPSAWRALLPFQSPTHSSEYRMSNRCNQDGNKGLRKDQKKYIPKNQNQSSKQLLNPKPTLSASFRHSLPKSSDSAAVSTAAAPSMSRIQMSVSGDWVSSRVSGGSFVNYLPEDEAVASGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWTEVARDTSLHEFLDSFLKFRSRWYDFPHRGANGIVAGVIIGEFELCRRVFMVLYRVSSNRDSGARAADSLSIKDHGVLLQGKKLLDLPKLLDICAIYNHENEDLTRILVENAIKSQLSIHENLLSVISHFLSIVSMMHQRCNSSLETLISTSSHEHSKLQADFLEVIDFINDAIVTLDSFVAAYRLAAIFFSSAVEVSCGNEDLLGTLARLHDILLPSLQQGFQIVFVAQEDDMVSNVAKSLKMLALRIVSLGWKLLEICYLGDEVFGKDLPVPVSMKMFPASVEDPVIRADILIQTLREIHGISQQVPDKQLGQTFLQHMEKNHSIINRINSLRNNGWIYVDDEQFDHLSTIVMCIPTSNTKDPSLSKTPVMSHISEVDEDAAMLESKICQIKDLFPEYGNGFLAACLVAYNQNLEEVIQRILEGTLHADLQSLDTSLETMTVPNSSTTANGRNDKGKGKLIESSTVAYTDQVSGCKEDIPIEGPSVSSASAGRYVRKSKDGMPNSQTLDKTATEDNEDFVGRKPSADLGDSSNSTTAGSAPSAPNPKWGSRRQPQFYVKDGKNYSYKVAGSVAVSNSEEASLVTQAQKELIYGLGRGGNLPLGAVRKLTESEQDSPPDVSAVDPRDNGRKSWGRGRREGGNGTAPSVPEEQGKQPNVAEVSDRGGWGGNRGRGRRGGGNHHRKDRAMNKHFAGLQGF 2181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12176081 12193037 - Carg10640-RA Car01g01397 142261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01397 2181 MobiDBLite consensus disorder prediction 1000 1023 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 753 772 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1093 1141 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1 47 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1086 1152 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1370 1402 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 2093 2181 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1000 1037 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 2011 2033 - -
Car01g01397 2181 ProSiteProfiles CUE domain profile. 1867 1910 IPR003892 GO:0043130
Car01g01397 2181 MobiDBLite consensus disorder prediction 510 539 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 510 549 - -
Car01g01397 2181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 578 634 IPR000504 GO:0003723
Car01g01397 2181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 576 634 IPR000504 GO:0003723
Car01g01397 2181 MobiDBLite consensus disorder prediction 750 783 - -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1342 1356 - -
Car01g01397 2181 Pfam CUE domain 1874 1909 IPR003892 GO:0043130
Car01g01397 2181 MobiDBLite consensus disorder prediction 1961 2037 - -
Car01g01397 2181 Pfam SPOC domain 1149 1279 IPR012921 -
Car01g01397 2181 MobiDBLite consensus disorder prediction 1342 1402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01397 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101209442 2095.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01397 Car-Chr1:12176081 Car09g00240 Car-Chr9:1318926 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01397 Car_Chr01 FPKM 55.800167 62.921841 55.403011 54.463463 56.827015 53.085251 57.573975 45.035862 43.683346 44.170761