Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01398 ATGGCTCTTGAAGCTCTGAATTCTCCCACCACTCCATCGCCGGCGCTGCACTACGACGACCCGAGTCACAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACCAAGCGTCCGCGGGGATTCGACAACCCTCCAACCGAGGAGGAGTATTTAGCGTTATGTCTTATCATGCTTGCTCGAGGCGGTGCCACCGCCTCTGACCCTGACCACCGACTTGCCTATGAAATTCCGATTCCGGCTCAGCCCATATCCGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCGACAAGGCGTTTTCGTCTTACCAGGCTTTGGGTGGACATAAAGCGAGTCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCCACCATAACCACTTCCGCCACCGCTACCACCGCCGTCGGTGGAGGTAAATCCCACGAGTGCTCAATTTGCCACAAGTCTTTTCCCACCGGTCAGGCCTTGGGTGGCCACAAGCGTTGCCACTACGACGGCGGAATTGGCAACAACAACAACAACAACCACAACCACAACCACAACCAAACACACAGCCACAACACCAACAGCAACAACCACGCCGTGACATCGTCCGAAGGAGTTGGGTCGACCCACACACAGAGCCACAGCCACCGGGACTTCGACCTCAACCTCCCCGCCTTGCCGGAGCTATCTCCGGGATTCTTCAACTCTTCCGGCGACGAGGAGGTCCAAAGCCCATTACCCCTGAAGAAGCCTCGAATCTTAACAATTCCCAAAATCGAAATCACTCAGACATAA 786 54.07 MALEALNSPTTPSPALHYDDPSHNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATASDPDHRLAYEIPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDHSTSSTITTSATATTAVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGIGNNNNNNHNHNHNQTHSHNTNSNNHAVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFNSSGDEEVQSPLPLKKPRILTIPKIEITQT 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12195770 12196555 + Carg10639-RA Car01g01398 142262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01398 261 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Car01g01398 261 MobiDBLite consensus disorder prediction 170 207 - -
Car01g01398 261 Pfam C2H2-type zinc finger 90 114 - -
Car01g01398 261 Pfam C2H2-type zinc finger 143 167 - -
Car01g01398 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Car01g01398 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Car01g01398 261 MobiDBLite consensus disorder prediction 108 140 - -
Car01g01398 261 MobiDBLite consensus disorder prediction 120 139 - -
Car01g01398 261 MobiDBLite consensus disorder prediction 1 44 - -
Car01g01398 261 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Car01g01398 261 MobiDBLite consensus disorder prediction 170 220 - -
Car01g01398 261 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01398 Car-Chr1:12195770 Car06g00806 Car-Chr6:6217335 2.24E-18 dispersed
Car01g01398 Car-Chr1:12195770 Car11g01139 Car-Chr11:9136879 1.11E-45 wgd
Car01g01398 Car-Chr1:12195770 Car12g00537 Car-Chr12:3570839 1.98E-77 wgd
Car01g01398 Car-Chr1:12195770 Car19g00415 Car-Chr19:6017365 2.70E-46 wgd
Car01g01398 Car-Chr1:12195770 Car05g00127 Car-Chr5:647835 8.32E-69 wgd
Car01g01398 Car-Chr1:12195770 Car09g00238 Car-Chr9:1312474 3.13E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2895 PF13912 zf-C2H2_6 1.60E-12 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01398 - - csv:101221218 415.616