Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car01g01399 | ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCTCAAGGCAACGCCACCTTGTTTCTTGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTTGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGCGGAGACGGTTCTCAGGGGCGGAGTTCCCCGGGCAAACCTCGGAATCGAATTTTCTCGAAATCCCACGGCGGAGACAGAATCCTCTCTTAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAATATTCAATTTTACCCTTCTAGTCCGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACCGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGATGAGTCGGTGATGACGAGCTTTGGAAGCGCGGATAATAGCGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA | 621 | 52.33 | MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPTAETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDESVMTSFGSADNSDGDRRKERKLLNLFI | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12199842 | 12200812 | + | Carg10638-RA | Car01g01399 | 142263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car01g01399 | 206 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 101 | IPR004883 | - | |
Car01g01399 | 206 | MobiDBLite | consensus disorder prediction | 160 | 195 | - | - | |
Car01g01399 | 206 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car01g01399 | Car09g00237 | CCT | |
Car01g01399 | Car09g00237 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g01399 | Car-Chr1:12199842 | Car14g00743 | Car-Chr14:4170324 | 4.23E-48 | dispersed | |
Car01g01399 | Car-Chr1:12199842 | Car03g00839 | Car-Chr3:6795366 | 1.94E-61 | wgd | |
Car01g01399 | Car-Chr1:12199842 | Car07g00582 | Car-Chr7:2957023 | 3.75E-63 | wgd | |
Car01g01399 | Car-Chr1:12199842 | Car09g00237 | Car-Chr9:1307442 | 9.48E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
2896 | PF03195 | LOB | 2.90E-24 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car01g01399 | - | - | cmos:111445767 | 406.757 |