Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01399 ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCTCAAGGCAACGCCACCTTGTTTCTTGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTTGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGCGGAGACGGTTCTCAGGGGCGGAGTTCCCCGGGCAAACCTCGGAATCGAATTTTCTCGAAATCCCACGGCGGAGACAGAATCCTCTCTTAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAATATTCAATTTTACCCTTCTAGTCCGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACCGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGATGAGTCGGTGATGACGAGCTTTGGAAGCGCGGATAATAGCGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA 621 52.33 MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPTAETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDESVMTSFGSADNSDGDRRKERKLLNLFI 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12199842 12200812 + Carg10638-RA Car01g01399 142263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01399 206 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Car01g01399 206 MobiDBLite consensus disorder prediction 160 195 - -
Car01g01399 206 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01399 Car09g00237 CCT
Car01g01399 Car09g00237 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01399 Car-Chr1:12199842 Car14g00743 Car-Chr14:4170324 4.23E-48 dispersed
Car01g01399 Car-Chr1:12199842 Car03g00839 Car-Chr3:6795366 1.94E-61 wgd
Car01g01399 Car-Chr1:12199842 Car07g00582 Car-Chr7:2957023 3.75E-63 wgd
Car01g01399 Car-Chr1:12199842 Car09g00237 Car-Chr9:1307442 9.48E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2896 PF03195 LOB 2.90E-24 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01399 - - cmos:111445767 406.757