Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01408 ATGAAATCCACTTTCGGCGGGCATTCTGAAGTCGATTTGTCGGAGATCACGACGCTCTGCCAGGCGGAAAATGTGGATGAAATCCTCGTTGAGGAAATCAAAGTGCTTGCTCTAATTGCTCCAGCGGCACTGCGGCAGTGCATTTCCTCTGAAGCGCGGCGGACATTTCTCGCGTATGTAACCCTAATCTTCAACTTAATCCTCAGTTTCCGTTTTCAGCGTTTCAAAATTTCAATCGGTGAAAGATTGGGAGACGAACGGCGTGGTTCTGCGATTCAACAGGTTTACTCTTCCCTGCTTCCTCCGGAAAGCTCCGAACATTTAAGAGCGACGCTTCTCTCCGAACGAACACCGACTGGTTCTGCCTTGAATATTTGGTCGAAAATCGTGTTATCGGGTACATCGGGTCACTCGCGACGTGAGGATGGCACCGCCAGCGTCGTCTTCTTCCAATCTTCTTCCCGAAGAAAATACACAATCACTGAAAATTTCATCCACATTTTCCCATGGAGAGACAGATCCCTAGAAACAACCTCGATTGTTCCGGACGGTGAAAACCGCAGTTCAGGAATCCGGCGAACCATCTGCGTTGCCGGCCCCCCTTTTCAGATCCAAGGTCGACTCTTAACTATGGCGGATAAGGAGAATATATTTCGACTCACTCGGGGTTCTAAGAAGAGGTCCGCCGAGGCTGCTACCCCCCACGATCGCTCTGCTAACAAGAGGAGAGTCGTTCTCGGAGAGCTTCCTATTTTACAGAATGCTACTTCTTCTTCCGTCGATCGGACTTCCAGGTCCAGACCCAGCAGGCAGAGACGGAGACTCAAATCGAGGGATACAGCGGAGACAAGTGCGGCCGCTCAAATTAATACGCTTCCGGATGCTGATGTCAAGCTATCGGATGAGGGCAATTCCGAAGACCCGCAAATGTGCACGGTTTTCGCCTCTGATATTTATGAGTACCTTCGCGCCATGGAGACTGATCCACGAAGAAGACCTTTACCAGATTACATCGGGAGGGTACAAAAGGATATAAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAAAAGAATACAAGCTTGTTTCAGACACTCTTTACCTCTCTATTTCATATGTTGACAGATACTTATCTCTAAACGCAATCAGCAGGCAAAAACTTCAATTGCTGGGGGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCGCATGTTGAAGAATTTGTTTATATAACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCAGATATATTGAAATCACTGGAATTTGAACTTGGGAGTCCCACAATAAAGACATTTTTAAGGCAAGTGCAGTTGAGATTCACAATGATTGCTCAAGAGACTTACGAATTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGTCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCAAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATACAAGCCAGCTGATATGAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTACAAATTTGTGTCTATCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1767 45.27 MKSTFGGHSEVDLSEITTLCQAENVDEILVEEIKVLALIAPAALRQCISSEARRTFLAYVTLIFNLILSFRFQRFKISIGERLGDERRGSAIQQVYSSLLPPESSEHLRATLLSERTPTGSALNIWSKIVLSGTSGHSRREDGTASVVFFQSSSRRKYTITENFIHIFPWRDRSLETTSIVPDGENRSSGIRRTICVAGPPFQIQGRLLTMADKENIFRLTRGSKKRSAEAATPHDRSANKRRVVLGELPILQNATSSSVDRTSRSRPSRQRRRLKSRDTAETSAAAQINTLPDADVKLSDEGNSEDPQMCTVFASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAKEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGSPTIKTFLRQVQLRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKYKFVSIMPSPPEIPIPYFEDVRI 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12228308 12232486 + Carg10629-RA Car01g01408 142272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01408 588 MobiDBLite consensus disorder prediction 221 287 - -
Car01g01408 588 MobiDBLite consensus disorder prediction 221 243 - -
Car01g01408 588 ProSitePatterns Cyclins signature. 350 381 IPR006671 -
Car01g01408 588 Pfam Cyclin, C-terminal domain 448 574 IPR004367 -
Car01g01408 588 Pfam Cyclin, N-terminal domain 317 445 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01408 Car09g00224 CCT
Car01g01408 Car05g00137 CCT
Car01g01408 Car09g00224 ECH
Car01g01408 Car05g00137 ECH
Car01g01408 Car12g00532 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01408 Car-Chr1:12228308 Car15g00608 Car-Chr15:3365078 4.92E-104 dispersed
Car01g01408 Car-Chr1:12228308 Car11g01125 Car-Chr11:8994451 9.19E-104 wgd
Car01g01408 Car-Chr1:12228308 Car12g00532 Car-Chr12:3524768 3.88E-139 wgd
Car01g01408 Car-Chr1:12228308 Car19g00427 Car-Chr19:6071411 2.09E-87 wgd
Car01g01408 Car-Chr1:12228308 Car05g00137 Car-Chr5:681997 3.37E-163 wgd
Car01g01408 Car-Chr1:12228308 Car09g00224 Car-Chr9:1270216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01408 K06627 - csv:101207493 634.409