Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01413 ATGGCCGTTCACCTTCCCCCCACTTCTCAACAACCACCTCCACCGACAGCCATTTTCCTCCTCGCCGGACAAAGCAACATGGCGGGGCGCGGCGGCGTCACCAACAGCACCCTAACGCACCGTCCCACGTGGGACCGCGTTGTTCCTCCCCAGTGCTCCCCCAATCCTTCTATCCTCCGCCTCGCCTCCGATCTCACCTGGGTTGAAGCTCGCGAGCCACTCCACGCCGACATTGATTTCCTCAAGACCAACGGGATTGGGCCTGGAATGCCATTCGCCAACACCATTCTCATGGATAAACCCGCCGGTCGGACGGTGATCGGTCTTGTCCCGTGCGCGATGGGCGGGACTTCGATTCAACAGTGGCAAAAGGGGTCCGATCTGTACACCCATTTATTGACCCGAGCCGAAGCGTCGATACTCAGCGGAGGCACGATTAAAGCGCTTCTGTGGTATCAGGGTGAAAGTGATACAGTGAATGCAGAAGATTCCGAGTTGTATGGTGGGAGATTGAAGAAGTTCTTCACTGACATTCGCTCCGATCTAAACATCCCATTCCTCCCAATTATTCAGGTGGGGATTGCATCAGGAGAGGGGCCGTATAAGGAAGGAGTGAGAAGAGGGCAATTAGGAATTGAGGTAATGAACGTGATGACTGTGGACGCATACGCATTGGGCTTGTCGTTTGAACCAGATGGGCTTCACTTAAATACCCCTTCTCAAGTTAAACTGGGTGGAATCTTGGCTGATGCATACCGCCGGTTTCCACCGCACCCACTGGCTGCTAGCCCATTAATAAGCGCTGCTTCCACGGCATCAGTTTTCAGTTTCTTTATTTCCATGTTTAGGACTATGACCTTCGTGTTGCTTCACCAAATTCTTTTGTCCTGA 891 53.2 MAVHLPPTSQQPPPPTAIFLLAGQSNMAGRGGVTNSTLTHRPTWDRVVPPQCSPNPSILRLASDLTWVEAREPLHADIDFLKTNGIGPGMPFANTILMDKPAGRTVIGLVPCAMGGTSIQQWQKGSDLYTHLLTRAEASILSGGTIKALLWYQGESDTVNAEDSELYGGRLKKFFTDIRSDLNIPFLPIIQVGIASGEGPYKEGVRRGQLGIEVMNVMTVDAYALGLSFEPDGLHLNTPSQVKLGGILADAYRRFPPHPLAASPLISAASTASVFSFFISMFRTMTFVLLHQILLS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12249780 12251007 + Carg10624-RA Car01g01413 142277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01413 296 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 16 252 IPR005181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01413 - - - cmos:111446742 559.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00558 Car-Chr15:3076621 Car01g01413 Car-Chr1:12249780 1.30E-72 transposed
Car01g01413 Car-Chr1:12249780 Car19g00443 Car-Chr19:6161027 3.14E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g716 . . . . . . . . . Cmo12g00513 Cma01g01811 . Car01g01413 . Sed10g2010 . . Bhi04g00383 Tan02g0958 Cmetu01g1629 . Hepe03g0733 . Lcy13g2107 Cla08g01592 Cam08g2092 Cec08g1673 Cco08g1804 Clacu08g1777 . . . . Cone17ag0865 . Lsi04g01518 . . Cme03g02072 . . . . . . . . Sed01g2693 Cmo01g01867 . Cma12g00570 . . . . Cpe02g00201 Bhi09g03274 Tan01g4732 Cmetu07g0030 . Hepe01g1801 Mch11g0331 . Cla05g02078 Cam05g2228 Cec05g2247 Cco05g2289 Clacu05g2222 Cmu05g2089 Cre05g2213 Lsi08g01498 Csa02g01924 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012322 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01413 Car_Chr01 FPKM 0.0 0.0 1.185573 1.178187 0.0 0.0 0.0 0.0 0.0 0.0