Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01415 | ATGAGGCACTACACGATGGCGAGACGGCATTGTTACCCAATATCCATTCTACATTCATCAAGTTCAGGTCACCAAGACGCTTCATTTCTTCTTGATTCCCCGTTTTGCTTGGAGGAAGAGAATGGGGATGGCCTTATCCAACCAAAGGACCAAACTTTCTTAATAAATGTTTGTGTCAATTCCCCAAATTCTGTCTTCTTGTCGGAGAGGGAAGACGAGGAATTGGTGTCTCTGTTCTCTAAGGAGAACAAAAATGAGTTTCTTCATAACACTCTCTCACACAATCCCTCTTTAGCAGCCGCTCGCTCCAAGGCTGTGGCCTGGATTCTGAAGGTCAATGCCCATTACTCTTTCACTGCACTCACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTCCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGGCCCATCTCACCGCCATTGCTTGTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCGCGTGCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTACTTTGAAGCTAAAACCATTAAAAAAATGGAGATTCTTGTTCTCTCTACGCTTGTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGATTATATCGTAAGACGGCTCGGGTTCAGGGACAAGCTCTGTTCTGAATTCCTCTGTAGATGTGAACGATTACTTCTCTCTGTCATCTTAGATTCTAGATTTGTATGTTTTCTTCCATCAGTCATAGCAAGCGCCATTATTTTTCAAGTTATCAACAACATAGAACCAAATGCCGCCGCCAAATGCCACGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAGGTAGAAGACTGTTCAAGATTCATCTTAGAAGCATCATCGAAAGAACGACACAGAAAGGACTGTAACAATAAACGAAGATTCAGTTTAATGGATGGTCGGAATCGGAACGTCGACTGTGCTGTGTCCTCGCCGGAGACAGCAACCAAGAAGAGAAAAAATTGA | 1020 | 44.22 | MRHYTMARRHCYPISILHSSSSGHQDASFLLDSPFCLEEENGDGLIQPKDQTFLINVCVNSPNSVFLSEREDEELVSLFSKENKNEFLHNTLSHNPSLAAARSKAVAWILKVNAHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMAHLTAIACLSLAAKVEETRVPLLLDLQVEENEYYFEAKTIKKMEILVLSTLVWRMNPVNPLSFLDYIVRRLGFRDKLCSEFLCRCERLLLSVILDSRFVCFLPSVIASAIIFQVINNIEPNAAAKCHDQLLGILQIDKDKVEDCSRFILEASSKERHRKDCNNKRRFSLMDGRNRNVDCAVSSPETATKKRKN | 339 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12255474 | 12256760 | - | Carg10622-RA | Car01g01415 | 142279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01415 | 339 | Pfam | Cyclin, N-terminal domain | 82 | 202 | IPR006671 | - | |
| Car01g01415 | 339 | Pfam | Cyclin, C-terminal domain | 204 | 313 | IPR004367 | - | |
| Car01g01415 | 339 | ProSitePatterns | Cyclins signature. | 102 | 133 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01415 | Car09g00219 | CCT | |
| Car01g01415 | Car05g00140 | CCT | |
| Car01g01415 | Car05g00140 | ECH | |
| Car01g01415 | Car09g00219 | ECH | |
| Car01g01415 | Car12g00528 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01415 | Car-Chr1:12255474 | Car07g00680 | Car-Chr7:3474261 | 9.72E-79 | dispersed | |
| Car01g01415 | Car-Chr1:12255474 | Car11g01112 | Car-Chr11:8836464 | 3.36E-72 | wgd | |
| Car01g01415 | Car-Chr1:12255474 | Car12g00528 | Car-Chr12:3487122 | 7.68E-94 | wgd | |
| Car01g01415 | Car-Chr1:12255474 | Car16g00312 | Car-Chr16:1905764 | 3.07E-85 | wgd | |
| Car01g01415 | Car-Chr1:12255474 | Car04g00447 | Car-Chr4:2527708 | 1.18E-73 | wgd | |
| Car01g01415 | Car-Chr1:12255474 | Car05g00140 | Car-Chr5:702502 | 2.19E-99 | wgd | |
| Car01g01415 | Car-Chr1:12255474 | Car09g00219 | Car-Chr9:1082662 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01415 | K14505 | - | csv:101218302 | 485.337 |