Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01420 ATGGGGACCTACCGATCTTCGCAGATTATGCCTCTCCTGTTCTTCGTTGTCATAACTTTATCATCGGCCTTGGCTTTCGCTTCTTCGATCATCTCCGAGAGGACGGATGAGGAGGTGATGGCGCTCTATGACCAGTGGCGTGCTAAGCATGGGAAGTTGCGGAACGGCCTCAGAGGACAGCGGGATGATCGATTCGAGATCTTCAAGGATAATCTTAAGTACATCGACGAAATCAACGCCCAAAATTTGCCATACCGTTTAGGTTTGAACGTATTTGCAGATCTGACCAATGCCGAGTACCGATCCAAGTACTTGGGAACCAGATTCGCCGCTGGTTCAAGGAGAAACAAGACGAGCAGTCGCTATCAGCCTCGCCTTGGGGATAAACTTCCCGACTCTGTCGATTGGAGGGAGAAAGGAGCCGTCGTTCCCGTTAAGGACCAGGGAAGCTGCGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCTGTGGAAGGCATAAACCAGGTTGTTACAGGCGACTTGGTAAGTTTATCAGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAATGGAGGCTTAATGGATTATGCCTTCGAGTTCATCATCAACAACGGTGGCATTGACACCGAGGAAGATTATCCTTACAACGGCTTTGATAGCTCCTGCATCCAATATAAGAAAAATGCTAGGGTCGTTTCAATTGATGGCTATGAAGACGTTCCTGTAAACGATGAGAAAGCACTGCAAAAAGCTGCCGCTAATCAGGTTGTGGCTGTTGCCATCGAAGGAGGTGGTAGAAGTTTCCAGTTATATCAATCGGGTATATTCACTGGAAAGTGTGGAACAAATTTGGACCACGGTGTTAATGTAGTTGGATACGGGTCTGAAGGGGGCGTTGATTACTGGATTGTGAGAAACTCATGGGGCGGGAGCTGGGGTGAACATGGCTACATCAGGATGCAACGTAACATTGATTCCCCAACAGGTCTCTGTGGGATTGCAATGGAGCCTTCCTACCCCACTAAAAATGGACCAAACCCACCAAATCCAGGCCCAACTCCTCCAAGTCCGGTGAAACCACCATCTGTATGCGATGAATATTACACCTGTCCCGCCGCTGAAACCTGCTGCTGCATCTTTGAGTTCTCAAACCTGTGCCTTGAATGGGGATGCTGTCCACTTGAAAGCGCCACCTGCTGTGATGACCATTACAGCTGCTGCCCCCATGACTATCCCATCTGTAATGTCCGTGCTGGAACCTGCTTGAAGGGGAAGAATGATGTTTTCGGAGTGAAGGCGATGAGGCGCACTACAGCTGCAGCAAAACCATCGTGGGCATTCGGAGATGTGGCTGTTGGAAAGAGCAGCGCTTAA 1386 49.42 MGTYRSSQIMPLLFFVVITLSSALAFASSIISERTDEEVMALYDQWRAKHGKLRNGLRGQRDDRFEIFKDNLKYIDEINAQNLPYRLGLNVFADLTNAEYRSKYLGTRFAAGSRRNKTSSRYQPRLGDKLPDSVDWREKGAVVPVKDQGSCGSCWAFSTIAAVEGINQVVTGDLVSLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYNGFDSSCIQYKKNARVVSIDGYEDVPVNDEKALQKAAANQVVAVAIEGGGRSFQLYQSGIFTGKCGTNLDHGVNVVGYGSEGGVDYWIVRNSWGGSWGEHGYIRMQRNIDSPTGLCGIAMEPSYPTKNGPNPPNPGPTPPSPVKPPSVCDEYYTCPAAETCCCIFEFSNLCLEWGCCPLESATCCDDHYSCCPHDYPICNVRAGTCLKGKNDVFGVKAMRRTTAAAKPSWAFGDVAVGKSSA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12273242 12277643 - Carg10617-RA Car01g01420 142284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01420 461 Pfam Cathepsin propeptide inhibitor domain (I29) 44 100 IPR013201 -
Car01g01420 461 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
Car01g01420 461 Pfam Granulin 379 426 IPR000118 -
Car01g01420 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Car01g01420 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Car01g01420 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01420 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101217590 790.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01420 Car09g00214 CCT
Car01g01420 Car09g00214 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01420 Car-Chr1:12273242 Car07g00685 Car-Chr7:3495854 5.46E-158 dispersed
Car01g01420 Car-Chr1:12273242 Car11g01109 Car-Chr11:8810869 0 wgd
Car01g01420 Car-Chr1:12273242 Car19g00445 Car-Chr19:6186291 2.70E-87 wgd
Car01g01420 Car-Chr1:12273242 Car03g00865 Car-Chr3:6942592 7.35E-149 wgd
Car01g01420 Car-Chr1:12273242 Car09g00214 Car-Chr9:1061901 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01420 Car_Chr01 FPKM 0.0 1.320185 0.0 0.0 0.0 0.0 1.681825 0.0 0.0 0.0