Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01421 ATGGCTGTGGAGTTTATGGTGGGTTTTGGGGACGCTGCTGCTAATTTCACGCCCAGTATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTTCATAGCTTCCTCACCTTGGTGTCTCATACTCCTAATCAACATCACTCTCAACACGATTCTTCCACTTCCACTGCGCCCGATGCTGCTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACTGGCCATGCTCGTTTCAGAAGGGCTCCGGTTGATTCTACTGCTTCCTTTCCGCCCAAGGTCAAGCCGCAACATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAACTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGTCCCACGCCTTACTCTGTTGTGCGTTTGCCTGGTCTGCCCAACAACAACCCCCATCAGCCTTCTAATCAGCCAAGTACTTTTCAACCCCAGCAGAATAAATCATCGGGGGGACTAAAAAATGGGTCTATAAACAGAAAAGACTCAACTTCCGCCATCAATTTCGCAGCCTCGCCGTCGATTTCCGCTGCAAATTCTTATATTTCATCCTTAACCGGAGACACCGAAAGCTTACACCCATCTCTGTCATCTGGTTTCCAGTTCACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCCTCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCAGGAAGTGCGGTTCGTCTTCAGGTCGATGTCACTGTTCCAAGAAGAGATTCGTTATTGAACTGAGAGTGTTTGCATGGCTTATCAGGAAAAACAGAATGAAAAGAGTGATCAGAGTTCCAGCGGTTAGTTCAAAACTTGCGGACATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCAATTAAAGGGTCTCCTCATCCGAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAGCACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTTACTTACGAGAACGATCACAATCACGCCCTATCTACCCAAACACCTGCACCGCTTCTTCTCGAGTCATCATAA 1161 48.06 MAVEFMVGFGDAAANFTPSMEENAAVSAVQEAASAGIQSVHSFLTLVSHTPNQHHSQHDSSTSTAPDAAAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVDSTASFPPKVKPQHQDPSSSSPISVPQLKKQESVSAFKVYCPTPYSVVRLPGLPNNNPHQPSNQPSTFQPQQNKSSGGLKNGSINRKDSTSAINFAASPSISAANSYISSLTGDTESLHPSLSSGFQFTNMSQVSSAGKPPLSSSSLKRKCNSMDDSARKCGSSSGRCHCSKKRFVIELRVFAWLIRKNRMKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSTQTPAPLLLESS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12282329 12283813 + Carg10616-RA Car01g01421 142285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01421 386 MobiDBLite consensus disorder prediction 155 191 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 158 191 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 113 132 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 238 256 - -
Car01g01421 386 Pfam WRKY DNA -binding domain 315 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01421 386 Pfam Plant zinc cluster domain 292 311 IPR018872 -
Car01g01421 386 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01421 386 MobiDBLite consensus disorder prediction 238 266 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 98 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01421 - - - cmo:103493562 584.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01421 Car09g00212 CCT
Car01g01421 Car09g00212 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01421 Car-Chr1:12282329 Car20g00828 Car-Chr20:5497044 2.50E-71 dispersed
Car02g01517 Car-Chr2:9786948 Car01g01421 Car-Chr1:12282329 8.72E-51 dispersed
Car01g01421 Car-Chr1:12282329 Car03g00867 Car-Chr3:6952711 3.27E-104 wgd
Car01g01421 Car-Chr1:12282329 Car09g00212 Car-Chr9:1055588 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g727 . Blo12g00965 . . Bpe02g00439 Bpe04g00173 Bma04g00155 Bma01g02264 . . Cma01g01820 Cma09g00254 Car01g01421 . . Cpe06g00175 . . . . . . . . . . . . . . . Cone4ag1594 Cone7ag1354 . . Lsi04g01528 . . . . . . . . . . . . Cmo01g01876 Cmo09g00247 . . . Car09g00212 . Cpe02g00194 Bhi09g03292 Tan01g4743 . . . . . Cla05g02069 Cam05g2221 Cec05g2240 Cco05g2281 Clacu05g2214 Cmu05g2081 Cre05g2205 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004656 1 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2898 PF03106 WRKY 3.90E-25 CL0274 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01421 Car_Chr01 FPKM 10.242021 11.754725 0.276354 0.226246 1.698829 1.133129 1.321678 0.0 0.0 0.0