Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01427 ATGGAAGGACAAGTTTGCTCGGGTGTAAGTTCATCGACAGAGAAGAGGAAGCAAAGGCATCAACAACAGAAGCAATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTAGCGGAAATCAGAGAACCCAACAAGCGTTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCTGCCGCCAGGGCTTACGACACCGCCGTTTTCTACCTCCGAGGCCCCTCCGCCCGGCTGAATTTCCCGGAATCGATTTTCGAAGAGGACCAACTGCAGGATGTGTCAGCCGCCTCCATACGAAAAAGAGCCACCGAAATCGGCGCTAGGGTTGACGCCATCCAAACCTCTCTACTTGCCTCTAATTCAAACTCTCAAATTTCGGAGAAGCCTGATTTAAACCAGTACCCCAACCCCGAAAGCTCAGACGACGATTAA 435 51.49 MEGQVCSGVSSSTEKRKQRHQQQKQYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPESIFEEDQLQDVSAASIRKRATEIGARVDAIQTSLLASNSNSQISEKPDLNQYPNPESSDDD 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12308932 12309366 + Carg10610-RA Car01g01427 142291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01427 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 142 - -
Car01g01427 144 MobiDBLite consensus disorder prediction 119 144 - -
Car01g01427 144 MobiDBLite consensus disorder prediction 1 25 - -
Car01g01427 144 MobiDBLite consensus disorder prediction 119 137 - -
Car01g01427 144 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Car01g01427 144 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Car01g01427 144 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Car01g01427 144 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Car01g01427 144 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Car01g01427 144 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Car01g01427 144 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Car01g01427 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 142 - -
Car01g01427 144 CDD AP2 28 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01427 Car-Chr1:12308932 Car02g00362 Car-Chr2:2680063 5.29E-48 dispersed
Car01g01427 Car-Chr1:12308932 Car12g00519 Car-Chr12:3431372 1.65E-07 wgd
Car01g01427 Car-Chr1:12308932 Car03g00872 Car-Chr3:6969206 6.84E-50 wgd
Car01g01427 Car-Chr1:12308932 Car05g00144 Car-Chr5:721418 3.84E-63 wgd
Car01g01427 Car-Chr1:12308932 Car09g00205 Car-Chr9:1025550 3.61E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2899 PF00847 AP2 1.80E-11 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01427 K09286 - csv:101219005 235.728