Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01443 ATGAAGGTTCTTGTAACTGGGGCGTCTGGATATCTGGGCGGAAGGCTGTGCCATGCATTGTTGAACCGAGGCTTCTCCGTTAGGGCATTGGTCCGTCCGACCAGTGACCTCTCATCTCTTCCTCATGATCCTTCCGCTCTTGAGCTCGTCTATGGCGATGTCACCGACTACCAGTCGCTCCTAGATGCTTTCTCCGGCTGCCATATCGTATTCCACGCAGCCGCACTAGTCGAGCCCTGGATTCCTGATCCATCCAAATTCATCTCAGTCAACGTTCGAGGGTTGAAGAACGTGTTGCAAGCGGTTACAGAGACGAAGACGATCGAGAAGATAATCTACACGTCGTCGTTTTTTGCGCTTGGCTCCACCGATGGATATGTTGCCGATGAAAACCAGGTCCATCACGAGAAGTTCTTTTGTACGGAGTACGAGAAATCAAAGGCTATTGCTGACAAGATTGCATTGCAAGCTGCATCTGAGGGCGTCCCGATAGTGCCGGTTTATCCCGGAGTTATCTATGGTTCTGGAAAGCTTACGGCTGGAAATGTCATCGCCCGCCTGTTGTTCACGCCAGTAAGTAACGGCCTAACAAGCAAAACACCAAAGATCAATCAGTGGAGAAACACTCATTCCTTTTGGATTCTGATCTCCATTTTTGGTGACAAAAGAGCTCCTTGTGAGACTGAATTGGGGAAATCTATGGAACTTCCCGACTTCCTTCTGATCGAACGGTTCAATTGGCGATTGCCGGGTTATATAGGCCAAGGAAGCGATAGATACTCGTTTAGCCATGTCGACGATGTGGTAGAAGGGCATATTGCAGCAATGCAGAAAGGTCGCGTAGGTGAAAGGTATCTTCTAACAGGAGAAAATGCATCATTTGTGGATGTTTTTGACACAGCTGCAGCCATTACTGGTACAAGAAGACCAATGTTTAACATTCCATTGTGGTTGATCGAAGCATATGGTTGGGTTTCAGTTGTTATCTCTCGGATCACTGGGAAACTTCCTCTCATCAGCCCCCCGGTTGTGAGTGTTCTGAGACATGAATGGGCATATTCGTGCGAGAAGGCGAAAGAAGAACTCGATTATAAGCCCAGAAGCTTGAAAGAAGGATTAGAAGAAATGGTTCCATGGCTAAAGAGCTTGGGTTTGATAAAGTATTAA 1167 47.39 MKVLVTGASGYLGGRLCHALLNRGFSVRALVRPTSDLSSLPHDPSALELVYGDVTDYQSLLDAFSGCHIVFHAAALVEPWIPDPSKFISVNVRGLKNVLQAVTETKTIEKIIYTSSFFALGSTDGYVADENQVHHEKFFCTEYEKSKAIADKIALQAASEGVPIVPVYPGVIYGSGKLTAGNVIARLLFTPVSNGLTSKTPKINQWRNTHSFWILISIFGDKRAPCETELGKSMELPDFLLIERFNWRLPGYIGQGSDRYSFSHVDDVVEGHIAAMQKGRVGERYLLTGENASFVDVFDTAAAITGTRRPMFNIPLWLIEAYGWVSVVISRITGKLPLISPPVVSVLRHEWAYSCEKAKEELDYKPRSLKEGLEEMVPWLKSLGLIKY 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12412256 12414934 - Carg10593-RA Car01g01443 142307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01443 388 Pfam NAD dependent epimerase/dehydratase family 3 285 IPR001509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01443 K15891 FLDH; NAD+-dependent farnesol dehydrogenase [EC:1.1.1.354] - csv:101223178 573.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01443 Car-Chr1:12412256 Car13g00020 Car-Chr13:212491 8.64E-16 dispersed
Car01g01607 Car-Chr1:13212374 Car01g01443 Car-Chr1:12412256 5.81E-06 dispersed
Car09g00023 Car-Chr9:127346 Car01g01443 Car-Chr1:12412256 9.17E-07 dispersed
Car01g01443 Car-Chr1:12412256 Car20g00779 Car-Chr20:4632794 4.28E-17 wgd
Car01g01443 Car-Chr1:12412256 Car09g00186 Car-Chr9:941186 9.88E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g782 . Blo12g00951 . Bda03g00219 . Bpe04g00185 Bma04g00172 . . . Cma01g01850 . Car01g01443 . . . . . . . . . . . . . . . . . . . . Cone17ag0837 . Lsi04g01575 Csa04g02395 . . . . . . . . . . Sed13g1732 Cmo01g01911 . . . . . . Cpe02g00171 Bhi09g03340 Tan01g4810 Cmetu07g1953 . Hepe01g1747 Mch11g0273 . Cla05g02028 Cam05g2179 Cec05g2194 Cco05g2241 Clacu05g2171 Cmu05g2039 Cre05g2166 . . Chy07g00120 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013934 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01443 Car_Chr01 FPKM 2.976131 3.428896 5.041551 4.983168 4.526385 5.624162 5.498469 1.863864 1.751103 1.691123