Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01444 ATGGAGCGATTGCAGAGAATGTTCGCCGGCGCCGGAGGTTCACTGGGGCACCCGCCGCCAGACTCGCCCACTCTGGATTCGTCGGAGCAGGTCTACATCTCCTCGCTCGCTCTTCTGAAGATGCTCAAACATGGAAGAGCTGGGGTTCCCATGGAGGTGATGGGTCTGATGTTGGGGGAATTTGTTGATGAGTACACCGTGCGTGTGGTCGATGTATTTGCTATGCCGCAAAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTATTCCAGACCAATATGCTCGACATGCTTAAACAAACTGGACGCCCTGAGATGGTTGTAGGATGGTATCACTCTCATCCTGGATTTGGATGTTGGCTCTCTGGTGTTGACATCAATACTCAACAGAGTTTTGAAGCTCTTAATCAGCGAGCCGTTGCCGTAGTTGTGGATCCAATCCAAAGTGTCAAGGGGAAGGTGGTTATCGATGCCTTTCGTTTAATTAATCCCCAGACAATGATGCTTGGCCAAGAACCACGACAGACAACATCAAACCTCGGCCATCTTAATAAACCATCTATTCAAGCATTAATCCATGGATTGAATCGCCATTATTACTCCATAGCAATTAACTATAGGAAGAATGAGCTTGAAGAGAAGATGTTGCTTAATCTTCACAAGAAGAAATGGACTGATGGGCTAACACTTCGACGATTTGACACACACTCGAAAACTAATGAGCAGACGGTCCAGGAAATGCTGAACTTGGCTATTAAGTACAACAAGGCGGTGCAGGAGGAAGACGAGTTGCCACCAGAGAAACTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTGGAAGAACATGTCTCCAATTTGATGTCATCAAACATCATACAAACATTAGGAACGATGCTCGACACGGGTTTTGGATTCGAGGAGAAGAGGAGGAGAAAGATGTGGGGATTCGGTGGGAGGTATTATTGGGGAAGAAGAGAGCGAGTCGGGAGAGTCGAAGGGATTGTAGTGGCGTTCGCGTGGATGTCTAGTCAGGAGAGGCACTTGAAAAGATATGTGGATATGTATTCTTCTCTCGGTTGGAATTCTCTCGTTTGCCATTCCGAATTCCTCAATATGGGTTTTGTTCTATCTCTGATTTCTTTTCCCTTGCAAAGGCGCTTGGCTGGAAAAACAGTAGCCTTGAGCTTTTATAATAGACTACAGTTCTTCCCTGATAAGGCTGCATCTCTGGCATTTGAAATTCTTAAAGTACTAGTCGAGGAGCTAAAGATCAAGAGATGTCCTATAGTATTTGCATCATTTTCTGGTGGGCCTAAAGCATGCATGTATAAGGTTCTTCAGGATGATTATCAAGTGGTCAGGGACTGTATTGCTGGCTACATTTATGATTCGAGTCCAGTTGATTTTACCAGTGACTTGGGAACTCGATTTTTGCTTCATCCAACTGTGCTGAAAGCATCCCAGCCACCAAGAATAGTGTCATGGGCAGCACACAGCATTGCTTCTGGTCTTGACACGCTCTTCCTCAATAGATTCGAATCACACCGTGCGGAATATTGGCAAACTCTTTATGCCTCAGTCAGTATGAAAGCTCCTTATCTTATTTTGTGCTCGGAAGAGGATGATCTTGCTCCCTATCAGACGATCTTCAATTTTGCTCAACGACTAGAAGACCTCGGGAGAGATGTTAAATTAATCAAATGGAATGGCTCCCCACATGTAGGGCATTTTCTGCATTTTCCAATCGAATATAGAGCTGCTGTCACAGAGTTGCTAAATAAGGCCGCTGGAGTTTACTGGCAAAGAACTAGACCTAATGAAGTAGCTGCAGTAGATAAAATGAACTGTGACTCTTGCAATCCAACACCCGACGTTAGAAAAGCTGCATCTCCATCAAGTAGTTTTCAGGAGCCTGCTCTTGCTCCAAGCAACCACCTTTTCTTCTCCAGTATGATAGATGGCTTTGACTACAGGGGCATTGGATCCAAGCACGACGAAGACATGGAAGGAGCTATGCGGCTATCTAATTCGCCAAGGACCGTTCCCCGTGGAGCTAATGGTCAAATCCTTTACGACGTTTGTGTTCCAAAGAACGTCGAGGATTGGGACATTGAATCATCAAGTTCTTCAAATGGTGTCCTGCGTGTACACACAAGGCGACATACCTCATTCAATCCCATCAAACTGATGCGTCGGTCGAGACTATAG 2223 45.43 MERLQRMFAGAGGSLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIIQTLGTMLDTGFGFEEKRRRKMWGFGGRYYWGRRERVGRVEGIVVAFAWMSSQERHLKRYVDMYSSLGWNSLVCHSEFLNMGFVLSLISFPLQRRLAGKTVALSFYNRLQFFPDKAASLAFEILKVLVEELKIKRCPIVFASFSGGPKACMYKVLQDDYQVVRDCIAGYIYDSSPVDFTSDLGTRFLLHPTVLKASQPPRIVSWAAHSIASGLDTLFLNRFESHRAEYWQTLYASVSMKAPYLILCSEEDDLAPYQTIFNFAQRLEDLGRDVKLIKWNGSPHVGHFLHFPIEYRAAVTELLNKAAGVYWQRTRPNEVAAVDKMNCDSCNPTPDVRKAASPSSSFQEPALAPSNHLFFSSMIDGFDYRGIGSKHDEDMEGAMRLSNSPRTVPRGANGQILYDVCVPKNVEDWDIESSSSSNGVLRVHTRRHTSFNPIKLMRRSRL 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12415249 12425483 - Carg10590-RA Car01g01444 142308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01444 740 Pfam Eukaryotic protein of unknown function (DUF829) 462 707 IPR008547 -
Car01g01444 740 Pfam Maintenance of mitochondrial structure and function 173 294 IPR024969 -
Car01g01444 740 ProSiteProfiles MPN domain profile. 31 166 IPR037518 -
Car01g01444 740 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 27 138 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01444 K03030 PSMD14, RPN11, POH1; 26S proteasome regulatory subunit N11 - csv:101212227 670.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01444 Car09g00184 CCT
Car01g01444 Car09g00184 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01444 Car-Chr1:12415249 Car09g00184 Car-Chr9:938016 0 dispersed
Car14g01178 Car-Chr14:10301896 Car01g01444 Car-Chr1:12415249 2.70E-06 dispersed
Car01g01444 Car-Chr1:12415249 Car16g00324 Car-Chr16:1996526 2.22E-116 wgd
Car01g01444 Car-Chr1:12415249 Car04g00471 Car-Chr4:2668328 6.25E-55 wgd
Car01g01444 Car-Chr1:12415249 Car05g00167 Car-Chr5:866837 0 wgd
Car01g01444 Car-Chr1:12415249 Car09g00183 Car-Chr9:934589 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g783 . . . . . . . . . . Cma01g01851 Cma09g00216 Car01g01444 . . Cpe06g00151 . . . . . . . . . . . . . . . . . Cone17ag0836 Cone20ag0181 Lsi04g01576 Csa04g02394 . . . . . . . . Bma01g00687 . Sed01g2650 Cmo01g01912 Cmo09g00209 . . . Car09g00184 . . Bhi09g03341 Tan01g4811 Cmetu07g1348 . Hepe01g1746 . . Cla05g02027 Cam05g2177 Cec05g2193 Cco05g2240 Clacu05g2170 Cmu05g2037 Cre05g2165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009167 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01444 Car_Chr01 FPKM 15.631745 18.840002 1.101157 0.953882 58.808975 60.408421 58.589542 0.0 0.0 0.0