Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01452 ATGGTGCTAGTGGTCGCTTCGTCGTCTGTTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTTCGTGATCCCGCTGCCACCTCAGGCTCCGTACTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCAATAATGGCATTGGCTTCCAACAATGAGGGTACATATATCGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTGAGCGGCAGACTGCTTATGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTAGTATTCTCTGAAGATGACTCCCTGCTAATTTCTGGCTCTGAAGATGGCTGCGTTAGAGTTTGGTCCCTTCTAAAGGTATTTGATGATGGATGGCAAAGGGAATCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTACCTGTTACTGACATTGTTATTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCGATCATTGATGCAATTGCTTTGGATCCCGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCCAAAAGCCCATCCAGCAGTGATTATGGATTGCATATTCTCGGCTCATTATCAAATCAGAGCAAGTCTGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTATTGATCTCTGGATCTGAGGACGGAGCAATCAAAGTTTGGGATACCAGAACCAATAATATTATTCGTGTTCTCAAACATTCAAAAGGTCCTGTAAATAATTTACTTATTGTTCGACAACAGCTCCTCCCGACTTCACAGCTAAATCCAACCTCCCAAGGTTCTTTGAGAAAGCATCGATCACTATTACCTCCTGCCCTTGCAAAATTCGGAAACTCGAAGGACGACGATGAAGACACAGGTGTTATCATTGGTCGATCAGGTCCTCCCATGGAATCCATGGGGTTTTCCCCCATTAGTTCTCATGTGATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCGTGATTATGGAAAATCCATGCAAATGCAACAGCAGTGGAGAAAACTAGCGTTCAACAACCGAGTCTCCATTGGAAGGCAGTGTCGGAGCTACAAACCTATGGCTTCATCCATGTCTTCTTCGCCTAACACCAACAAAGACGTCTCTGAAGTAGCAGAGCAGCTCGGCATAATCACTGCGCCTTACGGTTCCTGGAAGTCGCCAATCACCGCCGATTTTGTTACTGCTGCCTCGAAGCGACTTGGTGGCACTGCTGTTGACGGCAATGGACGTCTTATTTGGCTTGAATCACGGCCCTATGAATCCGGGCGGGGAGTGCTCGTCAAGGAATCGGAAAAGCCAGGGGATGAGCCTGGTGATATTACTCCGAAAGAGTTTTCAGTGCGGAACATGACTCAGGAATACGGCGGTGGTGCATTTGCGGTCGCGGGAGACTTCGTTGTCTTTTCGAATTACAAGGATCAAAGACTTTATAAGCAATCCTTAAGTTCAGATTCGCCTCCTCAAGCACTAACTCCCGATTACGGTGGACCATCAGTCAGTTATGCAGATGGGGTGTTTGATTCTCGTTTTAATCGTTTAATTACTATTCAGGAAGATGGACGTCAAAGTAGCCTGAATCCAATCACCACAATTGCGTCAGTAGAACTTGACGGCAAGGATATTAATGAACCGAAGGTCTTAGTTGGAGGAAATGATTTCTATGCCTTCCCTAGAGTGGATCCCAAAGGGGAACGGATTGCGTGGATTGAATGGGGTCATCCTAACATGCCATGGGATAAATCTGAGCTCTGGGTTGGCTACCTTTCTGAGAATGGCGAGGTTTACAAACGAGTTCGTGTTGCTGGTGGTGATCCAAAGCTTGTGGAATCTCCTACTGAACCGAAGTGGTCTGCTCAGGGAGAACTATTTTTTATTACTGATAGACAAAGTGGGTTTTGGAATCTCTATAAATGGTTTGAGGCTAATGATGAGGTGGCTCCATTATATTCTTTAAATGCCGAGTTTTCCCGACCCTTATGGTTTTTTGGCACAAGTTCTTATGAGTTCCTAAAGAACAGTGTTGGGAGAAACATCATAGTCTGCACCTACAGACAGCATGGGCGATCATATCTTGGAGTCTTGGATGAGGCGCAAAGTTCGCTATCCTTGCTCGACATCCCATTCACGGATATTAATAATATTGCTCTGGGTCGTGATTGTATATATGTGGAAGGATCGACAGCACTTGATCCATCATCTATTGCCAAGGTGACCCTAAATGAAAGAATCTTGGAAATAGCACATTTCACTATTATCTGGTCTTCTTCGCCGGATATTTTGAAATTTATGTCATACTTCAGCCTTCCCGAGTTCATTGAATTTCCAACCGAAGTTCCTGGCCAAACTGCTTTTGCCTACTTTTATCCGCCGACCAATCCTATTTACCAGGCTAGTCAGGATGAAAAGCCTCCACTGTTGTTGAGAAGTCATGGAGGGCCAACTGCTGAAACACGTGGAATTTTAAATCCTAGCATTCAATATTGGACTAGTAGAGGCTGGGGTTATGTTGATGTCAATTATGGTGGTAGCGCTGCCTTTGGTAATAGCAAACCGTATTGTTTTCTCCAGGTGAACTCTGGAAAGGTTGATGGAGAACGATTATGTATCACTGGGGGCTCTGCTGGTGGATATACCACCTTAGCTGCTCTTGCTTTTAGAGATACGTTTAAGGCAGGAGCTTCCTTGTACGGGATAGCTGACTTAAGCTTGTTGAGAGCAGATACACACAAGTTCGAATCTCATTATATCGACAATCTTGTTGGGAATGAAAAAGATTACTTTGAGAGGGCACCGATCAATTTTGTTGACAAATTTTCTTGCCCTATAATCCTATTCCAGGGATTGGAGGACAAAGTCGTACTGCCTAATCAATCTCGTAAGATTTATCATGCCTTGAAGGATAAGGGCTTGCCTGTTGCTCTAGTGGAGTATGAAGGAGAACAACATGGTTTCCGCAAGGCAGAAAATATTAAATTTACCCTCGAACAGCAAATGATGTTCTTTGCTCGATTAGTTGGACGATTCCAAGTTGCAGACGATATTAATCCAATCAAAATTGAAAACTTTGACTGA 3336 44.15 MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGSVLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQWRKLAFNNRVSIGRQCRSYKPMASSMSSSPNTNKDVSEVAEQLGIITAPYGSWKSPITADFVTAASKRLGGTAVDGNGRLIWLESRPYESGRGVLVKESEKPGDEPGDITPKEFSVRNMTQEYGGGAFAVAGDFVVFSNYKDQRLYKQSLSSDSPPQALTPDYGGPSVSYADGVFDSRFNRLITIQEDGRQSSLNPITTIASVELDGKDINEPKVLVGGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGEVYKRVRVAGGDPKLVESPTEPKWSAQGELFFITDRQSGFWNLYKWFEANDEVAPLYSLNAEFSRPLWFFGTSSYEFLKNSVGRNIIVCTYRQHGRSYLGVLDEAQSSLSLLDIPFTDINNIALGRDCIYVEGSTALDPSSIAKVTLNERILEIAHFTIIWSSSPDILKFMSYFSLPEFIEFPTEVPGQTAFAYFYPPTNPIYQASQDEKPPLLLRSHGGPTAETRGILNPSIQYWTSRGWGYVDVNYGGSAAFGNSKPYCFLQVNSGKVDGERLCITGGSAGGYTTLAALAFRDTFKAGASLYGIADLSLLRADTHKFESHYIDNLVGNEKDYFERAPINFVDKFSCPIILFQGLEDKVVLPNQSRKIYHALKDKGLPVALVEYEGEQHGFRKAENIKFTLEQQMMFFARLVGRFQVADDINPIKIENFD 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12453668 12464747 - Carg10584-RA Car01g01452 142316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01452 1111 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Car01g01452 1111 Pfam WD domain, G-beta repeat 112 148 IPR001680 GO:0005515
Car01g01452 1111 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Car01g01452 1111 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Car01g01452 1111 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Car01g01452 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Car01g01452 1111 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Car01g01452 1111 Pfam Prolyl oligopeptidase family 947 1093 IPR001375 GO:0006508|GO:0008236
Car01g01452 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Car01g01452 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01452 Car-Chr1:12453668 Car08g00308 Car-Chr8:1972092 2.59E-12 dispersed
Car17g00170 Car-Chr17:1054367 Car01g01452 Car-Chr1:12453668 5.78E-09 dispersed
Car09g01017 Car-Chr9:6818453 Car01g01452 Car-Chr1:12453668 6.63E-38 transposed
Car16g00389 Car-Chr16:2393568 Car01g01452 Car-Chr1:12453668 1.52E-44 transposed
Car18g00223 Car-Chr18:1263930 Car01g01452 Car-Chr1:12453668 3.07E-54 transposed
Car01g01452 Car-Chr1:12453668 Car09g00178 Car-Chr9:891250 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01452 - - bhj:120085177 1213.75