Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01456 GTACTTTTCATTAAAACTGCTCGAGACGGAAGTTTAAATAACGAAGAGCTTCAGAGCCCTCTCCCGCCACGGCTTTCTGCTGAAGCTTCAACAATGGCAGTAACTGACTTCTTCGTCGGAGAGATCGCGACTGAGCTTCTCAGAATGATGGTACAACTTTCTACAAAATCCTGCCTCTGTAAAACGACGGCAGCTCACATCGCCAATTCCATTCAGCAAATGTTGCCGATTATTGAGGAGATAAAGTACTCGGGGGTTGAATTGCCCGCTCATCGTCAATTTCAGTTGGATCGCTTCAGCGAGACTCTCAGAAAAGGCGTTGAGATTTCCGAGAAGGCTCTCCAATGCGGCCGATTGAACATTTACAGAAACTTGCGGCTCGCGAGGAAGATGGAGAAGCTCGAAAAGGATATCGACCGCTTCATTAACGGCCCTATGCAAGCGCATATACTGGCCGACGTACACCACATGAGATTCGAGACCACCGAGCGATTCGATCGGCTCGAAGGACATTTGCTGGAACGGCGGCTCGAGTCGATGAAGATTAGGGCAGACGGTTCGGGAGAGGGAGGGTGGTGGGTAGAGGAGGCGTTTAAGAGGGCGGAGGAGGAAGAAAGGTACGAGACTAATGTGATGAATATAGGAATTGGATTGCGTGTGGCGAAGAAGGAATTGAAGGAGCTGGTGACTGGAAGGGACGATTTGACAGCGGTTGGGATTACTGGACTCGGCGGTTCGGGGAAGACGACTTTAGCTAGAGAATTCTGCAAAGATCCTGAAGTTCGAAGTTACTTTAAAGAGAAAATATTGTTCTTGACGGTGTCACAGTCCCCTGATATGGATCAACTGAGGAGAACGATCTGGGGATATGTAATGGGTAGCGATAGTTTGAATGCTTATGATCCGATTTCTCAAGGGAGGCCTGCAAATTCAGCTTTAGTGGTTCTGGATGATGTGTGGTCAATCTCAGTTCTTGAGAATCTCATTCCAAACATTCCTGGCTGCAAAACTCTTGTGGTTTCTCGATTCAAATTCCCTGAGGTTCTTCGTGCTACTTGTGAAGTAGAGTTATTGAAGGAAAGTGAAGCAATTGCTCTGTTTTGCCACTCTGCTTTTGGGCAATGGACCATTCCTTTCACTGCTAATCACAACTTGGTCAAACAGGTTGTGAATGAATGCAAATGTCTGCCTCTGGCTCTTAAAGTCATAGGAGCGTCTCTCAGAGGACAAAGCGAGATGTTCTGGAACACTGCAAAGACCAGGTTGTCGCGAGGTGAGCCTATTTGTGAGTCTCATGAGAACAAATTGCTTCGTAGAATGGCAATCAGTATTGATTGTCTCTCGAGTAAAGTGAGAGAATGCTTCCTCGATTTGGGATGCTTTCCCGAAGACAGAAAGATTCCTCTTGATATTCTCATCAATGTTTGGAAGGAGCTACACGATCTTGATGAAGAAGAAGCTCTTGCTGTCCTGTTCGAATTATCTCAGAAGAATCTCCTTACTCTGGTGAAAGATGCACGCGGTGGTGACTTTTACGGCAGTTATTATGAGATGTACGTCACTCAACACGATGTCTTGAGGGACATTGCTCTTCATTTCAGTAGCCGGGAGAGTGTAAATGACCGCAAGCGATTGCTGATGCCAAAAACTGAAACGGAGCTTCCAAAAGAATGGTTAAGGAAATCAGATCAGCCATTCAACGCCCAACTGGTTTCTATTCACACAGGGGAAATGAAAGAAATGGACTGGACGCAGATGATATTTCCCGAGACCGAAGTGCTGATTCTAAACTTCTCGTCGAGTGAATATTTCTTGCCTCCTTTCCTTTGCAACATGCCGAAGCTGAGAACACTGGTTGTGCTAAACAACAATGCAGCACATGCAACTCTCAGCAATTTCTCTGTTTTTTCTAGTTTGACCAACTTGAAGAGCATCTGGCTGGAAAAAGTTTCCATCACACGACTAGTAGATAATTGCGTCCCATTGAAACATCTGAGGAAGATATCTCTTGTTTTCTGCAAGATTAACAACAGCCTCGACGAGTCGATGATAAACGTATCCCAGATCTTCCCGAGCCTTTCAGAACTCAAAATCAATTACTGCAATGACTTGGTTAAGCTACCTTCAAGCATTTGTGAGATGCAAAATCTCAAGTGTCTTTGTGTCACCAACTGTCATAGTTTGAGCCAACTGCCATCCAACTTTTGGAAGCTAAAGAATTTACAAATCTTGAGGCTTTTTGCTTGCCCACATCTCACAACTCTACCACCAGGCATTTGTGAACTCTCTTCTCTCAAGTACATTGACATTTCTCAATGTGTTAACTTGTTCAGACTTCCTGAAGAACTTGGTAAACTGACAAACTTAGAGAAAATTGACATGAGAGAATGCCCACAGATCAGAGGACTACCCAGATCAGTTGTGTCCATGCAATCTCTCCATCACGTAATCTGCGAAGAAGACGTCTCGTGGCTGTGGGAGGATTTGAAGAATCACATGCCTAATCTCTACATTCAAGTGGCCGAGAAATGCTTCGATCTCGACTGGCTCAACGATTGA 2559 45.1 VLFIKTARDGSLNNEELQSPLPPRLSAEASTMAVTDFFVGEIATELLRMMVQLSTKSCLCKTTAAHIANSIQQMLPIIEEIKYSGVELPAHRQFQLDRFSETLRKGVEISEKALQCGRLNIYRNLRLARKMEKLEKDIDRFINGPMQAHILADVHHMRFETTERFDRLEGHLLERRLESMKIRADGSGEGGWWVEEAFKRAEEEERYETNVMNIGIGLRVAKKELKELVTGRDDLTAVGITGLGGSGKTTLAREFCKDPEVRSYFKEKILFLTVSQSPDMDQLRRTIWGYVMGSDSLNAYDPISQGRPANSALVVLDDVWSISVLENLIPNIPGCKTLVVSRFKFPEVLRATCEVELLKESEAIALFCHSAFGQWTIPFTANHNLVKQVVNECKCLPLALKVIGASLRGQSEMFWNTAKTRLSRGEPICESHENKLLRRMAISIDCLSSKVRECFLDLGCFPEDRKIPLDILINVWKELHDLDEEEALAVLFELSQKNLLTLVKDARGGDFYGSYYEMYVTQHDVLRDIALHFSSRESVNDRKRLLMPKTETELPKEWLRKSDQPFNAQLVSIHTGEMKEMDWTQMIFPETEVLILNFSSSEYFLPPFLCNMPKLRTLVVLNNNAAHATLSNFSVFSSLTNLKSIWLEKVSITRLVDNCVPLKHLRKISLVFCKINNSLDESMINVSQIFPSLSELKINYCNDLVKLPSSICEMQNLKCLCVTNCHSLSQLPSNFWKLKNLQILRLFACPHLTTLPPGICELSSLKYIDISQCVNLFRLPEELGKLTNLEKIDMRECPQIRGLPRSVVSMQSLHHVICEEDVSWLWEDLKNHMPNLYIQVAEKCFDLDWLND 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12473169 12476648 + Carg10580-RA Car01g01456 142320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01456 852 Pfam NB-ARC domain 226 438 IPR002182 GO:0043531
Car01g01456 852 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 39 163 IPR008808 -
Car01g01456 852 ProSiteProfiles RPW8 domain profile. 32 180 IPR008808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01456 - - - csv:101210269 1387.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01456 Car09g00173 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01456 Car-Chr1:12473169 Car05g01110 Car-Chr5:10674668 1.41E-123 dispersed
Car20g00810 Car-Chr20:4998194 Car01g01456 Car-Chr1:12473169 2.81E-12 dispersed
Car05g00720 Car-Chr5:5012668 Car01g01456 Car-Chr1:12473169 2.23E-20 transposed
Car01g01456 Car-Chr1:12473169 Car03g00896 Car-Chr3:7107732 5.71E-102 wgd
Car01g01456 Car-Chr1:12473169 Car09g00173 Car-Chr9:859676 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g829 Blo01g01539 . Bda01g00559 . Bpe02g00418 . . Bma01g02289 . . Cma01g01868 Cma09g00205 Car01g01456 . . Cpe06g00140 . . . . . . . . . . . . . . . Cone4ag1553 Cone7ag1400 . . Lsi04g01596 Csa04g02374 . . . . . . . . . . Sed01g2631 Cmo01g01926 Cmo09g00199 . . . Car09g00173 . Cpe02g00159 Bhi09g03379 Tan01g4836 Cmetu07g2143 . Hepe01g1731 Mch11g0258 . Cla05g02001 Cam05g2152 Cec05g2169 Cco05g2217 Clacu05g2144 Cmu05g2014 Cre05g2140 . . Chy07g00103 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01456 Car_Chr01 FPKM 20.314857 22.996784 32.362217 32.794613 6.345606 5.899292 7.493778 25.030527 21.713615 23.204601