Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01463 ATGACGGTGTTTCATTTCTTCAACTGTGCGATTCTCACTTTCGGTCCTCATGCTGTCTACTACTCTGCAACGCCCTTAGTAGTGGAACGGTTTGTATTCCCAGTGCCACGTTCTGATTTCTACCATAACTACTGGGTTTCTCTGCTCCTCACTATCTGTACTCGTCTTCACGCTCATCCTTCCTATGCGGCTTCTATTTTTACCTCCTCGCCCTACCCCAATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCCCACGACGAGGTGGTTTCTCTCTTCCGATGCATGCAGTGTCTAGACCTCAGGCCCCATCCCTCTGTTTATATATACTTGATTAAGTTAGCTGGGAAATCTGGCAATTTGTTCCATGCTTCTGTCCTGAAGTTGGGTCATATTGACGACCACTTCATCCGTAATGCTGTATTGGATATGTATGCAAAATATGGACAAGTGGATCTTGCCAGGAAGTTGTTTGAGCAAATGCCTAATAGAACTCTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAATTCGGGAAATGAAGCTGATGCAGTCATGCTGTTTAATATGATGCCTGATAGGAATACTATTTCATGGACTGCCATGGTTACTGGGTATGCTAAGAGGAGGGACTTGGAGAGTGCTAGAAGGTATTTTGACGAGATGCCAGAGAAAACTGTAGTCTCGTGGAATGCCATGCTATCAGCTTATGCTCAAAATGAATGTGCAGAAGAGGCTTTGAAATTGTTCCATCGAATGCTGAAAGAGGGAATCACTCCTGATGATACAACATGGGTAGCTGCAATTTCATCGTGCTCTTCCATCGGCAATCCTAACCTTGCTGATTCACTTCTAGCAAAGATTAACCAAAAGCACGTCATTTTGAATAATTATGTCAAAACGGCTTTACTTGACATGCATGCAAAATTTGGTAACCTTGAAATTGCTAGAAGAATTTTTGATGAATTGGGAGGATTTGCAGCCAATGGTCATGGGAAGGATGCTATCAAGTTACTGTTAACAATGGAAGAAGAAGGCATTGAACCAGACAATGTCACATATATTGGTGTTTTGACTGCATGTAGTCATGCAGGAATGCTGAAAGAAGGTAAAAACATCTTTAAGTCAATTAAAGCACCTACCGTGGATCACTATGCTTGTATGGTTGATTTATTAGGAAGAGCAGGTGAATTAGATGAAGCCAAAATATTAATTGAATCTATGCCAATGAAACCTCACGCTGGTGTTTATGGCTCTTTGTTAAATGGCAGTCGAATTCACAAGAGAGTTGAGCTGGGAGAACTTGCTGCTAACAAGCTCTTAGAGCTTGAACCTCAAAACCCAGGAAATTATATTTTACTTTCTAATATATATGCCTCTGCTGGAAGATGGGAAGATGTTAGACAGGTTAGAGAGAAGATGAGGAAGGGAGGTGTCAAGAAATCAGTTGGAATGAGTTGGGTGGAATATAAGGGTCAAATACATAATTTCACTGTGGGTGATAGATCGCATGAATGGTCAAAAGATATTTATCGATTATTGGCTGAACTTGAAAGGAAGATGAAGAGGGTTGGCTTTGTAACTGATAAAAGTTGTGCACTGCGAGATGTTGAGGAGGAAGAGAAGGAAGAAATGCTGGGGACTCACAGTGAGAAGTTGGCCATTTGTTTTGCTCTTCTTGTCAGTGAAGTGGGGACACCAATTAGAGTGGTGAAAAATTTGAGAATTTTGAAGGGATATGTTCTTGCCATGATTACTGGTAAATTGGCGAAGAGCAAATTTATGGATAAAATTCATTTGCATAAAGAGAGATTATCTGAGTATGACACACTCGGAACGTCAGTCAAAGCAGCACTGGTTTACCTTGGAACGGCCTTAGTAAAGCTTGTCTGCCTTGCAACCTTCCTTAACGTGTCAGAGAATGACTCCTTTGACCTATATCAGGAACTGTTGAAAGCGCTTATTGGTTTAATAGATGTTGCCGGACTTTACTTCGCTTTGACCCAGTTGACTTACCGGAACATTTCTCAGAACCATAAATTTCAGGCAGTTGGACTGGGTTGGGCATTCGCTGATTCTGTTTTGCATAGACTTGCACCACTTTGGATTGGTGCCAGAGGACTAGAGTTTACTTGGGATTACATTTTGCAGGGCCTTGAAGCTAATGCAAATCTGGTGTTGAGCATATCCCTTGCTGCATTGGGATCTTTGATGTGGCTTCGGAAGAACAAACCCAAAGCGCTAATTCCCATAATTTATATCTGTGCACTGATTGTGGCTACTATGCCATCAATCACAAGCTACTTAAGGCGGGGAATGGGTTGGCATTTCCCTAAGGTGGTGGGATTTGAACTCTTCACCTCTTTGGCGATGGCTTTTATTAGTTGGCAGCTTTTTTCTGCTTGTCAGAGACCCTCTGTTTAA 2442 42.06 MTVFHFFNCAILTFGPHAVYYSATPLVVERFVFPVPRSDFYHNYWVSLLLTICTRLHAHPSYAASIFTSSPYPNASVYSCMLKYYSRMGAHDEVVSLFRCMQCLDLRPHPSVYIYLIKLAGKSGNLFHASVLKLGHIDDHFIRNAVLDMYAKYGQVDLARKLFEQMPNRTLADWNSMISGCWNSGNEADAVMLFNMMPDRNTISWTAMVTGYAKRRDLESARRYFDEMPEKTVVSWNAMLSAYAQNECAEEALKLFHRMLKEGITPDDTTWVAAISSCSSIGNPNLADSLLAKINQKHVILNNYVKTALLDMHAKFGNLEIARRIFDELGGFAANGHGKDAIKLLLTMEEEGIEPDNVTYIGVLTACSHAGMLKEGKNIFKSIKAPTVDHYACMVDLLGRAGELDEAKILIESMPMKPHAGVYGSLLNGSRIHKRVELGELAANKLLELEPQNPGNYILLSNIYASAGRWEDVRQVREKMRKGGVKKSVGMSWVEYKGQIHNFTVGDRSHEWSKDIYRLLAELERKMKRVGFVTDKSCALRDVEEEEKEEMLGTHSEKLAICFALLVSEVGTPIRVVKNLRILKGYVLAMITGKLAKSKFMDKIHLHKERLSEYDTLGTSVKAALVYLGTALVKLVCLATFLNVSENDSFDLYQELLKALIGLIDVAGLYFALTQLTYRNISQNHKFQAVGLGWAFADSVLHRLAPLWIGARGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKALIPIIYICALIVATMPSITSYLRRGMGWHFPKVVGFELFTSLAMAFISWQLFSACQRPSV 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12507937 12513784 - Carg10573-RA Car01g01463 142327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01463 813 Pfam E motif 433 495 IPR046848 -
Car01g01463 813 Pfam PPR repeat family 231 278 IPR002885 -
Car01g01463 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Car01g01463 813 Pfam PPR repeat 144 168 IPR002885 -
Car01g01463 813 Pfam PPR repeat 174 201 IPR002885 -
Car01g01463 813 Pfam PPR repeat 77 103 IPR002885 -
Car01g01463 813 Pfam DYW family of nucleic acid deaminases 531 584 IPR032867 GO:0008270
Car01g01463 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Car01g01463 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Car01g01463 813 Pfam Pentatricopeptide repeat domain 344 398 IPR002885 -
Car01g01463 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 231 IPR002885 -
Car01g01463 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Car01g01463 813 Pfam Predicted membrane protein (DUF2053) 608 746 IPR019164 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01463 - - - csv:101214420 554.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01463 Car09g00165 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01463 Car-Chr1:12507937 Car11g01036 Car-Chr11:7786207 5.95E-122 dispersed
Car01g01463 Car-Chr1:12507937 Car09g00165 Car-Chr9:822453 2.02E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g840 . . . . . . . . . . . Cma09g00195 Car01g01463 . . Cpe06g00133 . . . . . . . . . . . . . . . . . Cone17ag1308 Cone20ag0164 Lsi04g01606 Csa03g04153 Chy04g00567 . . . Bda08g01317 . . Bpe05g00070 . . . . Cmo09g00191 . . . Car09g00165 . . Bhi09g02027 . . . . Mch11g0242 . Cla05g01993 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003631 2 2 2 3 1 1 2 1 2 1 2 0 2 1 1 2 1 4 2 1 1 1 1 1 0 1 1 2 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01463 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0