Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01469 ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA 615 49.92 MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12575054 12576922 - Carg17124-RA Car01g01469 142333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01469 204 ProSitePatterns Ribosomal protein S9 signature. 143 161 IPR020574 GO:0003735|GO:0005840|GO:0006412
Car01g01469 204 Hamap 30S ribosomal protein S9 [rpsI]. 74 204 IPR023035 -
Car01g01469 204 Pfam Ribosomal protein S9/S16 83 204 IPR000754 GO:0003735|GO:0005840|GO:0006412
Car01g01469 204 Gene3D - 70 204 IPR014721 -
Car01g01469 204 PANTHER RIBOSOMAL PROTEIN S9 46 204 IPR000754 GO:0003735|GO:0005840|GO:0006412
Car01g01469 204 SUPERFAMILY Ribosomal protein S5 domain 2-like 78 204 IPR020568 -
Car01g01469 204 PANTHER 28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL 46 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01469 K02996 RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9 - csv:101206632 310.071
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01469 Car-Chr1:12575054 Car15g00996 Car-Chr15:7787091 6.78E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g872 Blo01g01549 . Bda01g00550 . Bpe02g00408 . . Bma01g02299 . . Cma01g01885 . Car01g01469 . . . . . . . . . . . . . . . . . . . Cone7ag1794 . . Lsi04g01634 Csa03g04178 Chy04g00540 . . . . . . . . . . Cmo01g01948 . . . . . . Cpe02g00146 . . . . . . . Cla05g01967 Cam05g2118 Cec05g2129 Cco05g2181 Clacu05g2106 Cmu05g1982 Cre05g2101 . . . Cme04g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009850 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01469 Car_Chr01 FPKM 5.164247 5.154928 3.692092 4.348388 8.823456 9.527904 8.757822 5.892768 5.89533 6.018121