Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01470 ATGATAAGGTTCTTTCCGACATCAATTCATCGCTTATATTCGTGTCTACTTCTTCGGAAGTCGATTCACGTATCTGGAATTCTTCAATGGAAGTTCCGGGACGAATTGAAGCTGAACCAATCGGATTTGGTTGATCGAATCTCTCGTCTTCTAGTTCTTCGACGAGTCGATGCCCTCGCCAAGCTCTCCTTTAGTTTTTCCGATGATTTGATGGATTCAGTGCTTCGCAATCTCAGATTAAACCCTTATGCTTGCTTGGAGTTCTTTAAATTGGCTTCTAGTCAACAAAAATTCAGACCGAATATCAATTCCTATTGCAAGATTGTTCACATACTATCACGGGCCCGAATGCATGAAGAGGCTAGGGTGTACTTGAATGAACTTGTGGTTCTATGCAAGAACAATTACACCGCGTGTGTAGTATGGGACGAGCTTGTGAGGGTTTATAAAGAATTTTCGTTTTCTCCTACGGTTTTTGATATGATTTTGAAGGTTTATGCCGAGAAGGGAATGACAAACTTTGCACTGCGAGTGTTTGACAATATGGGGAAGTGTGGTCGTGTTCCAAGTTTGAGGTCCTGCAATAGTTTGTTGAGTAATTTGGTCGAAAATGGAGAAACATCCAGGGCTCTGCTTGTTTATGAACAAATGATTGCATTAGGCGTCCTTCCTGATATTTTTAGTTACACAATAATGGTGAATGCATACTGTAAGGAAGGAAGAGTGGATGAAGCGTTCGAATTTGTGAAAGAATTTGAGAGGTCATGTTGCGAACCGAATGTAGTAACTTACAATAGTTTGATTGATGGATATGTCAGTCAAGGAGATGTTTTCACGGCGAAAAAGGTGTTGAAGTTAATGTCTGAAAGGGGCGTCTCTGAAAATTCCATAACATATACTTTGTTGATAAAAGGTTATTGCAAGAGAGGTCAGATGGAGCATGCTGAGAAGCTAATCAGGTACATGGAGGATAAAGAATTGTTTGTTGATGAGCATGTTTATGGAGTTTTAATTCATGCATATAGTAGTGCTGGTAGAATGGACGATGCTCTTAGACTAAGGGATGCAATGTTGAAAGTAGGCTTAAAAATGAATACTGTAGTTTGCAACTCAATTATTAATGGGTTTTGTAAGATTGGTCATGTTAAAAAAGCAGCAGAACTGTTGGTTGGTATGAAAGATTGGGACTTGAGACCAGATTCTTATAGCTATAACACTCTTCTAGATGGGTTTTGTAGACAAGAAAATTTCAATGAAGCTTTCAAACTTTGTAATGAGATGCACGAAAAAGGAGTTAATTTGACTGCTGTGACTTATAATACGCTTCTCAAGAGTTCTTGCCATGCTGGTTATGCTGACCATGCCCTACAGATTTGGAACTTAATGCAGAAAAGAGGCGTGGCCCCGGATGAGGTTAGTTATGGTACACTTTTAGATGCATTTTTCAAAGTAGGCGCTTTTGATAAAGCTATGATGATGTGGAGGGTCGTACTGTCGAGGGGTTTTGCAAGGAGTACAACTCTTTATAATACCATGATCAATGGCTTTTGTAAGATGGGGAAACTAATGGAAGCACAAGAGATTTTTCTTATGATGAAGGAACTAGGCTGTCCATCTGATGGAATAACATATAGAACTTTAATTGATGGATATTGTAAAGTTGGAAATATGGTAGAAGCCTTAAAATTGAAGAACATGGTTGAACGAGAGGGAATCGGCGTTTCCATTGAAATGTACAATTCTCTTATTACTGGTGTTTTCAAATCTGAAGAATTACACAAATTGAGTGGTCTTCTAGCTGAGATGGCGGACCGGGATCTATCTCCCAATGTCGTAACTTATGGCTCACTTATAGCAGGTTGGTGTGACAAAGGAATGATGGACAAAGCATATAGTGCATACTTTGAGATGATCAACAAAGGGATTGCACCAAATATTATTATTGGCAGCAAAATTGTCAGTAGTCTATATCGACTTGGTAAGATCGACGAAGCAAGTTTGATTTTGCATCAAATGGCAGATATTGATCCTGTTGTAGGTCGTTCATGTTCTATGGAATTGACAAAGTCTGGTCCAAGACATCTTCAAACACAGAAAATTATGGATTCTTTTGGCTCAAATGCCACGAGCATCCCTCTGTCAAACAATATCATATATAATGTTGCAATTGCAGGGATATGCAAATCTAAGAAGGTCGATGATGTTAGAAGAATCTTGTCCGATCTGTTACTTCGAGGCTTTCATCCCGATAATTACACATTTTGTTCCCTAATCCATTCATGTTCTGTTGCTGGTAAAGTCGATGAGGCCTTTTGTTTAAGAGATGACATGATAAAGGCAGGTCTTGTCCCTAATATTTATGTGTATAATGCTCTTATAAATGGTTTATGCAAGTCGGGTAATCTCGATCGAGCTCTGAGCCTATTCCGTAAACTCCCACAGAAGGGCTTATCACCCACTGTAGTTACATACAATACTCTGATTGATGGATATTGCAAGGCTGGTAGAACAATTGAGGCTTTTAAACTGAAGGAAAGAATGACTGAAGAAGGCATTTCTCCCTCATCTGTGACCTATTCCACCTTGATACACGGGCTCTGTAAGCGAGGGGATATTGAGCAATCTGTGGGGCTTTTGAATGAAATAATCAAGGCAGGTAAGGACTCGAGCACAATGGATTCACTTCTGGTTCGAGTTTACGTCAAATGGAGAGACAAGCAGAAGACATCAGAATCGAACGGCTTAACCGATGTCCAATCCATGGCGCTACATCGAGCTTGA 2781 39.66 MIRFFPTSIHRLYSCLLLRKSIHVSGILQWKFRDELKLNQSDLVDRISRLLVLRRVDALAKLSFSFSDDLMDSVLRNLRLNPYACLEFFKLASSQQKFRPNINSYCKIVHILSRARMHEEARVYLNELVVLCKNNYTACVVWDELVRVYKEFSFSPTVFDMILKVYAEKGMTNFALRVFDNMGKCGRVPSLRSCNSLLSNLVENGETSRALLVYEQMIALGVLPDIFSYTIMVNAYCKEGRVDEAFEFVKEFERSCCEPNVVTYNSLIDGYVSQGDVFTAKKVLKLMSERGVSENSITYTLLIKGYCKRGQMEHAEKLIRYMEDKELFVDEHVYGVLIHAYSSAGRMDDALRLRDAMLKVGLKMNTVVCNSIINGFCKIGHVKKAAELLVGMKDWDLRPDSYSYNTLLDGFCRQENFNEAFKLCNEMHEKGVNLTAVTYNTLLKSSCHAGYADHALQIWNLMQKRGVAPDEVSYGTLLDAFFKVGAFDKAMMMWRVVLSRGFARSTTLYNTMINGFCKMGKLMEAQEIFLMMKELGCPSDGITYRTLIDGYCKVGNMVEALKLKNMVEREGIGVSIEMYNSLITGVFKSEELHKLSGLLAEMADRDLSPNVVTYGSLIAGWCDKGMMDKAYSAYFEMINKGIAPNIIIGSKIVSSLYRLGKIDEASLILHQMADIDPVVGRSCSMELTKSGPRHLQTQKIMDSFGSNATSIPLSNNIIYNVAIAGICKSKKVDDVRRILSDLLLRGFHPDNYTFCSLIHSCSVAGKVDEAFCLRDDMIKAGLVPNIYVYNALINGLCKSGNLDRALSLFRKLPQKGLSPTVVTYNTLIDGYCKAGRTIEAFKLKERMTEEGISPSSVTYSTLIHGLCKRGDIEQSVGLLNEIIKAGKDSSTMDSLLVRVYVKWRDKQKTSESNGLTDVQSMALHRA 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12577470 12580250 - Carg17125-RA Car01g01470 142334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Car01g01470 926 Pfam PPR repeat 472 502 IPR002885 -
Car01g01470 926 Pfam PPR repeat 161 186 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 855 889 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Car01g01470 926 Pfam PPR repeat 361 393 IPR002885 -
Car01g01470 926 Pfam PPR repeat 781 811 IPR002885 -
Car01g01470 926 Pfam PPR repeat 221 251 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 820 854 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Car01g01470 926 Pfam Pentatricopeptide repeat domain 563 618 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Car01g01470 926 Pfam PPR repeat family 506 553 IPR002885 -
Car01g01470 926 Pfam PPR repeat family 715 761 IPR002885 -
Car01g01470 926 Pfam PPR repeat family 259 308 IPR002885 -
Car01g01470 926 Pfam PPR repeat family 399 448 IPR002885 -
Car01g01470 926 Pfam PPR repeat family 819 868 IPR002885 -
Car01g01470 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01470 - - K17964 cmax:111480971 1781.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01470 Car-Chr1:12577470 Car04g00262 Car-Chr4:1478254 3.08E-33 dispersed
Car01g01470 Car-Chr1:12577470 Car19g00470 Car-Chr19:6359509 1.89E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g881 . . . . . . Bma04g00196 . . . . . Car01g01470 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00538 . . . . . . . . . . Cmo01g01949 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009718 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 2 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01470 Car_Chr01 FPKM 5.010777 6.83556 8.651282 8.804694 10.022622 8.094772 11.505613 11.317518 12.623531 11.843628