Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01476 ATGCCATCCTATATGTCAAAACTACGAGCACCGGTTCACTTTCTAGGGTGGGAAGGTGGATTTAAAAGTTCACTGGAGTTTCTTTTTGGGCAACAGAAACTCTTGTGTGGCAGTTCAAGCCTGTTTCACTCAGTACCTTATTCCTCACTCACAGAATTGCATGCACTCTTAAGACCTGGCACTATTTCTGGTGCTAGTTCAGAGCTAGTTAATAGTAGGAGGAATATCTCTGTTCTTGGAGCAATTTCTCGCACATTTTCTATTCCTTCTGTGTCAGGCCCTGCGTTACAGACCTGTGGGTATCACATTGATTGTGCCATTGCTGAATCCAATCAATATTCAACTCGCAGCAAGTTTCAAGACAAACCAATGGCTGCTTGTGGTTCTAGAGCTGGACTTGGTGAATGTTCTCTCGAGAATCTAAGTTTTAGGATTGCACGCACCTCTCCTCCAGCGATCAGTCCTAGTATTTGTTTCAACAAAAGAAGCGTTGATTGCTGCCCAAAAGCCAGCATGAGTTTGAAAAATCAGGAGCAGCCTAGCAATAATGTGATATATGGATACTTTACATACAATGTTGCAAAAAGGTTTTGCAGCAGTTACCTACATGCTGGGTTGGGAGCAAGGGATCTTCATAGTTCGTCCACTTCTTCCCTAGCTGCTGGTTCTGCCCCCAATTTGTCATTTGATAATTCTGCACGGGAGGAACAACTTGCTAACTCTACCGATTCATCCGCACAAAAGATTCCGAAAGGCAAATCAATGAAACTGGTTTCTGGGTCTTGCTATCTGCCCCACCCTGATAAAGAAGATACTGGTGGAGAGGACGCTCACTTTATTTGTGTGGATGAACAAGCTATAGGGGTGGCTGATGGTGTGGGTGGTTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGAGAACTCATGTCTAATTCAGTTAATGCAGTTCAAGAGGAGCCCAAGGGCTCAATTGATCCAGCTAGAGTCTTGGAGAAGGCTCACTCGAAAACAAAAGCCAAAGGCTCCTCCACTGCTTGTATCATAGCGCTTACAGAACAAGGGCTCCATGCAATCAATTTAGGAGACAGTGGATTTATGGTCGTTAGAGACGGATGCACAATATTCAGATCTCCTGTGCAGCAGCATGATTTTAACTTCACCTTTCAATTGGAGAGTGGAAACAATGGCGATTTACCTAGCTCTGGACAGGTCTTCTCCGTCCCTGTTGCTCCTGGAGATGTCATAATTGCTGGCACTGATGGACTCTTTGATAACTTGTACAACAACGAGATCACCGCAGTGGTGGTTCATGCCATGAGAGCTGGCTTAGGCTCTCAGGTGACTGCCCAGAAGATAGCTGCTCTTGCACGCCAGCGAGCTCAAGATAAAGACCGACAAACACCTTTCTCCACTGCTGCTCAAGATGCTGGGTTTCGGTACTACGGAGGCAAGCTTGACGACATTACCGTCGTCGTGTCATATGTTGCCAGCTCCAACGACAATTCCGACGACCAAAATTTCTGGTGCTTTAAGTCTATACTCTCCTGCTTCACTCACTCCCCAGCTGCGCCTGATTTCTCCATGGCCGGCCGTAAAGACAAAGCTCAGTCTGCCCGCGTCTCTCGAATCGTCATCGCCATCGCAATCGGAGTTCTTGTTGGCTGTCTTTTTGCTTTCTTGTATCCTCATGGACTTTTCGCCTCTGATCTGCCTGTCCAAAACCGTCGCCTCGCCAAATCCGAGTTTCTGGTTCAGTCTTCTTCTCCTTGCGAATCGTCGGAGCGGTTCAAGATGCTTAAAGGCCACGTCGTTTCAATATTAGAGAAGAACTCCCAGTTGGAGAAGCGTATAAAGGATCTAACAGGGGAACTGAGGATTGTGGAACAAACAAAAGATCATGCTCAGAAGCAATATTTGGCGCTCAGTGAAAATCACAAGGCTGGTCCATTTGGTACTGTCAAAGGTCTTAGAACCAACCCTACCGTAATCCCTGATGAATCTGTAAACCCTCGATTGGCGAAGCTCCTGGAGAAAGTTGCTATCCAGAGGGAGCTGATTGTGACACTCGCGAATTCTAATGTACAACCCATGCTGGAGGTTTGGTTTACGAGTATCCAGAAGGTCGGTATACCGAATTATTTAGTTGTGGCTCTGGATGACCAGACGGAAGAATTCTGCAAATCCCATAATGTTCCTGTCTACACGAGAGATCCAGACAAGAGTGTTGATTTAATCGGAAAGGAAGGAGGCAACCACCAAGTCTCGGCATTGAAGTTTCGGATTTTGAGGGAGTTCTTGCAACTTGGATACAGTGTTCTTCTCTCAGACGTCGATATAGTCTACTTACAGAATCCTTTCGATCATCTTTACCGGGATTCAGATGTGGAGTCGATGAGTGATGGTCACAGCAATATGACAGCTTATGGATACAACGATGTATTTGATGAACCTGCCATGGGCTGGGCTAGATATGCACACACTATGAGAATATGGGTTTACAACTCTGGTTTCTTCTACATTAGGCCTACACTGCCTTCGTTTGAGCTTTTGGATCGTGTCGCGACTCGGCTTTCTCAAGAAAAAGCATGGGACCAAGCTGTTTTTAACGAGGAACTCTTTTATCCTTCTCGTCCTGGACGTGATGGACTTCATGCCTCCAAGAGAACCATGGATATGTATCTTTTCATGAACAGTAAGGTACTCTTCAAGACTGTTCGTAAGGACCCGAAACTCAGACAGTTGAAACCCGTCATTGTTCATATTAATTACCATCCCGACAAGTATCCAAGAATGAAAGCAGTCGTCGAATTCTACGTGAACGGTCAGCAAAATGCTCTGGATTCGTTCCCAGATGGTTCTGAATGA 2871 45.84 MPSYMSKLRAPVHFLGWEGGFKSSLEFLFGQQKLLCGSSSLFHSVPYSSLTELHALLRPGTISGASSELVNSRRNISVLGAISRTFSIPSVSGPALQTCGYHIDCAIAESNQYSTRSKFQDKPMAACGSRAGLGECSLENLSFRIARTSPPAISPSICFNKRSVDCCPKASMSLKNQEQPSNNVIYGYFTYNVAKRFCSSYLHAGLGARDLHSSSTSSLAAGSAPNLSFDNSAREEQLANSTDSSAQKIPKGKSMKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAIGVADGVGGWADLGVDAGQYSRELMSNSVNAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQGLHAINLGDSGFMVVRDGCTIFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFSVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGSQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVASSNDNSDDQNFWCFKSILSCFTHSPAAPDFSMAGRKDKAQSARVSRIVIAIAIGVLVGCLFAFLYPHGLFASDLPVQNRRLAKSEFLVQSSSPCESSERFKMLKGHVVSILEKNSQLEKRIKDLTGELRIVEQTKDHAQKQYLALSENHKAGPFGTVKGLRTNPTVIPDESVNPRLAKLLEKVAIQRELIVTLANSNVQPMLEVWFTSIQKVGIPNYLVVALDDQTEEFCKSHNVPVYTRDPDKSVDLIGKEGGNHQVSALKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHSNMTAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFYIRPTLPSFELLDRVATRLSQEKAWDQAVFNEELFYPSRPGRDGLHASKRTMDMYLFMNSKVLFKTVRKDPKLRQLKPVIVHINYHPDKYPRMKAVVEFYVNGQQNALDSFPDGSE 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12605502 12611314 - Carg17131-RA Car01g01476 142340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01476 956 MobiDBLite consensus disorder prediction 233 249 - -
Car01g01476 956 Pfam Stage II sporulation protein E (SpoIIE) 285 496 IPR001932 -
Car01g01476 956 Pfam Nucleotide-diphospho-sugar transferase 712 929 IPR005069 -
Car01g01476 956 ProSiteProfiles PPM-type phosphatase domain profile. 261 497 IPR001932 -
Car01g01476 956 Coils Coil 605 639 - -
Car01g01476 956 MobiDBLite consensus disorder prediction 233 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01476 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101205693 887.871
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01476 Car09g00150 CCT
Car01g01476 Car09g00150 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01476 Car-Chr1:12605502 Car04g00720 Car-Chr4:4175670 3.28E-149 dispersed
Car01g00637 Car-Chr1:3751604 Car01g01476 Car-Chr1:12605502 1.06E-44 transposed
Car09g00151 Car-Chr9:729697 Car01g01476 Car-Chr1:12605502 0 transposed
Car01g01476 Car-Chr1:12605502 Car19g00494 Car-Chr19:6540064 0 wgd
Car01g01476 Car-Chr1:12605502 Car09g00150 Car-Chr9:725177 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01476 Car_Chr01 FPKM 7.780404 9.435168 10.680447 10.774498 21.02005 20.717052 19.484907 9.965852 9.85233 8.978642