Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01477 ATGGTTGATTTGGAAAATTCTTCCCCGGTTGAGGTTTCCAGAGATGCTGGTTTATCTTCTTCAGGTTATATTGAACCAGTGGCGGTGGTGGCTCCGGCGAAGAAGAAACGGAACCTGCCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTCTGTCGCCGGAGAGTTTACTGGCGACGAACCGGTTCGTATGCGAGATCTGCAACAAAGGTTTCCAGCGGGACCAAAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGACAGCGGACTAGCAATGAGGTTCGTAAGCGCGTCTATGTTTGCCCGGAACCTTCCTGCGTCCACCATAACCCGGCGAGAGCGCTTGGCGATCTCACTGGAATAAAGAAGCATTTCTGTAGAAAGCACGGCGAGAAGAAATGGAAGTGCGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCACATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGCGGCACTTTATTTTCAAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTATTGGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGCAGTTCAAAACTCTGAAGGAAAGGAATCCACCACTTCAAAAGCCGCCGTGACTTCGCCTCCTCCGCCGCCGCTAACACCGTCGACCACGGTGGTTTCTCCGGCGTTATCTATTCACAGCTCAGAGCTAGCTGATAATCCGATAAGACTTCCATCTGTTTCAACGCCTGCAGCGACGACATGCTTGACCTCCGCGTCTGTCAATAGTACCACAAATGCAAGTGCTAACGGCAGTAGCTCAAACAATGTGTTTGGAAATTGTACTGTTTTTGCCCCTTCTACGTCAATTTCAGGGACGACCCAGATATCCCCAACATTACCACCACCCAGTTTACCCGCGTCAATAGTACCCTACGATTGCGCCTCTACTCGCCCTTCTGCTTCCGCAGTTAATCCCACATCGCTCTCTCTCTCCACATCTCTCTATCTTTCCTCTAAAGGATCCTCCCTCTTTGCCCCATCTGACCAAGATCGTCTGCAGTACACGTGGTCCACTCAACCGGCAGCCATGTCTGCCACCGCCCTGCTGCAGAAGGCAGCAGAAATGGGGGCAACAGCGTCTAATCCGTCGTTGTTTCGTGGCTTTGGGATGGCCACTTCTTCGACTGGTCAAGATACCTCTGCCACTATTCAATGGAGTAGGAATTTGAACCGAGATCACCGGAATGGCTCTTCGTTAACGGCTGGTGTAGGGCTTGATCTCCCATCCGGACCTGACGGTTCTGGTTTGATGATGGCTGGAGGCCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGAGATCTTCTTGGTCTTGGCTTAGGCGGTGGTGGAGCCTCTGCAAGTAGATTCTCGGCTTTGATTGCTTCCATGGGTGGTGGGTCTGGTTACCCCGTTGCAGCTTCAGACGCCTGCGGCGGAAGTGGCAATGGAAGCCCCTCCGGCAACGCTTGGGATCAAGATGAAAAGCATTGA 1554 52.45 MVDLENSSPVEVSRDAGLSSSGYIEPVAVVAPAKKKRNLPGMPDPAAEVIALSPESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLAVQNSEGKESTTSKAAVTSPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSTPAATTCLTSASVNSTTNASANGSSSNNVFGNCTVFAPSTSISGTTQISPTLPPPSLPASIVPYDCASTRPSASAVNPTSLSLSTSLYLSSKGSSLFAPSDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSTGQDTSATIQWSRNLNRDHRNGSSLTAGVGLDLPSGPDGSGLMMAGGPFCSFGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYPVAASDACGGSGNGSPSGNAWDQDEKH 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12613645 12617196 - Carg17132-RA Car01g01477 142341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01477 517 Pfam Zinc-finger of C2H2 type 63 85 - -
Car01g01477 517 MobiDBLite consensus disorder prediction 200 216 - -
Car01g01477 517 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Car01g01477 517 MobiDBLite consensus disorder prediction 200 230 - -
Car01g01477 517 MobiDBLite consensus disorder prediction 493 517 - -
Car01g01477 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01477 Car09g00148 CCT
Car01g01477 Car09g00148 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01477 Car-Chr1:12613645 Car16g00684 Car-Chr16:4345668 2.29E-111 dispersed
Car11g01486 Car-Chr11:11999270 Car01g01477 Car-Chr1:12613645 7.67E-86 transposed
Car01g01477 Car-Chr1:12613645 Car09g00148 Car-Chr9:719274 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2903 PF12874 zf-met 0.0037 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01477 K25869 - zju:107420256 545.043