Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01497 ATGGCGTCTTTGTGTAGTGAGGCGAATACTGCTATGACGACGCCTCTGAGAGGCATAATTAGCGAGCAGAGTGAAATAAGAGAAGGCAGTGGGAATTCGTCGAGAAAAGTGAGGGAGGGAGTTCAAGTGCGTCATCTCGGGAAGTCGCATATTGTCCCTGAGCAGCCTTCGTCATCTTCTCCGGTTCCGATCGAACAGAGCCGGTGGGCGAATTTGCCGCCCGAGCTTCTATTGGACATAATTCAACGAGTGGAAGCGAGTGAGACCACTTGGCCTTCTCGCCGGCATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAATTGTGAGGACTCCCGAACAGTGTGGGTGGATCACCTTCCCAATTTCCCTGATGCAGCCGGGACCAAGAGAAACGCCAATCCAGTGCTTCATTAAAAGAGAAAGGGCAACTTCAACGTTTCGGCTCTATCTCGGCCTAAGCCCTGCTCTGTCTGGTAATCTAAGTAAACTGCTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACTGATTTCATTGTACGAGCAAGCAACAATTTCATTGGAAAATTGAGGTCAAATTTTCTGGGGACCAAGTTTTCGATTTATGACAGTCAGCCTCCACATGACCCAAAATTGCGAACTAGTAGATCAAAACGAAGAATTCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAAGCTACGAGCTGAATGTCCTCCGCACCAGAGGGCCGAGGAGAATGAGGTGCACAATGCATTCGATACCTGTTGCAGCTGTGGAGGAGGGCGGCACTGCCCCAACTCCAACAGAGTTTAAAGACTGCATCGATGACCATGATTCATCTACGTCGAGTTGCAAAGGAAAGAAGCCGATATGGGAGTCGTCCCCCGAGCCTCTTGAATCGACAGCACCGTTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTGAATTTCAAAGGGCGTGTCACGGTTGCATCTGTGAAGAATTTCCAGCTGGTTGCTGCAGCAGAGACGAGTGAGAATGTGTCTGCAGCTGAACAAGAAAAAGTGATTCTGCAGTTTGGGAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTACCCTCTCTCAGCTTTCCAAGCGTTTGCAATCTGCCTTAGTAGCTTTGATACCAAGCCAGCTTGTGAATGA 1239 48.59 MASLCSEANTAMTTPLRGIISEQSEIREGSGNSSRKVREGVQVRHLGKSHIVPEQPSSSSPVPIEQSRWANLPPELLLDIIQRVEASETTWPSRRHVVACASVCRSWRMITKEIVRTPEQCGWITFPISLMQPGPRETPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVRASNNFIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVSYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCIDDHDSSTSSCKGKKPIWESSPEPLESTAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSENVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12703505 12705187 - Carg17152-RA Car01g01497 142361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01497 412 MobiDBLite consensus disorder prediction 29 45 - -
Car01g01497 412 Pfam F-box domain 69 116 IPR001810 GO:0005515
Car01g01497 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Car01g01497 412 Pfam Tub family 130 407 IPR000007 -
Car01g01497 412 MobiDBLite consensus disorder prediction 16 65 - -
Car01g01497 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01497 Car09g00133 CCT
Car01g01497 Car09g00133 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01497 Car-Chr1:12703505 Car16g00653 Car-Chr16:4150748 0 dispersed
Car01g01497 Car-Chr1:12703505 Car07g00424 Car-Chr7:2158858 2.32E-161 wgd
Car01g01497 Car-Chr1:12703505 Car09g00133 Car-Chr9:637201 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2905 PF01167 Tub 1.20E-97 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01497 K19600 - csv:101222500 713.761