Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01523 ATGAGTAAGAGGCCACCGCCGGACCCTGTGGCCGTGCTCCGAGGTCATCGGGCCTCTGTTACTGACGTTTCTTTTCATCCGTCTGAACCTCTTCTCTTTTCGGGCTCTGCAGATGGTGAGTTGCGTATTTGGGATACGGCTCAGCATAGAACGGTATCATCAGCATGGGTGCATAGTGCGGCACACGGAATTATTAGTATTGCTTGTAGTCGTTCAATTGGGACAAATAGAGTTGTCAGCCAGGGTAGGGATGGAACTGTGAAGTGCTGGGATATTGATGATAGGGCTCTGTCCAGAGTTCCCTCTGTCACAATCAACACAAATGCCTATCACTTTTGCAAACTCTCCTTGGTGAAGCAGCCTTCTGATTTTTCAAGGCACGATGGTGGTCCTAAGTATAGTAATGATATAGACCAGAACCCCGTCGAGGTCGAAACATTGAGCTGCAATGGAGAAAAGACTCAAGAAAATTCTACTGAGCAGGCATGCATATCAGAAGAGGACGGACTTAAGTATGTGGCTGTTGCCGGGGAGCAATCTTCAGAGGTTGAAATTTGGGATCTGAATTCTGGGGAAAGGTTGCTACGACTTCCTCCAAACTGTGAAGGGGATTGCCCAAATATCTCTACCAAGGAGAGAGGATTGTGCATGGCAGTCCAAGCCTTTTTACCGTCTAAATCTCAGGGATTCTTAAATGTCTTGTCTGGATACGAGGATGGTTCCATGCTTTGGTGGGATCTAAGGAATCCGGGTGTTCCAGTAACATCAGTGAAGTGTCATTCAGAGCCAGTTCTAAGCATTTGCGTTGATGGATCTTGTAATGGTGGTATCTCAGGAGCTGCAGACGACAAAATTGTGACTTTTAGTTTGGATCATTCCATGGGGACATGTCTGGTGAAGAAAGAAATTACTTTGGAACGGCCTGGCATAGCAAAGGTCTCTATTCGACCAGATGACAAGATTGCTGCAACTGCTGGTTGGGATCACAGATTACGGATATATAATTATCGGAAAGGAAGCCCCCTTGCTATATTGAAGTATCATCAGGCCTTGTGTAATGCTGTGTCATACTCGGACAACTGTAAATTAATGGCATCTGCGTCAGAAGACAGAACAGTGGCACTCTGGGAACTCTATCCTCCTCGGGCTTGA 1152 46.53 MSKRPPPDPVAVLRGHRASVTDVSFHPSEPLLFSGSADGELRIWDTAQHRTVSSAWVHSAAHGIISIACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVPSVTINTNAYHFCKLSLVKQPSDFSRHDGGPKYSNDIDQNPVEVETLSCNGEKTQENSTEQACISEEDGLKYVAVAGEQSSEVEIWDLNSGERLLRLPPNCEGDCPNISTKERGLCMAVQAFLPSKSQGFLNVLSGYEDGSMLWWDLRNPGVPVTSVKCHSEPVLSICVDGSCNGGISGAADDKIVTFSLDHSMGTCLVKKEITLERPGIAKVSIRPDDKIAATAGWDHRLRIYNYRKGSPLAILKYHQALCNAVSYSDNCKLMASASEDRTVALWELYPPRA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12845757 12850419 + Carg17178-RA Car01g01523 142387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01523 383 Pfam WD domain, G-beta repeat 340 376 IPR001680 GO:0005515
Car01g01523 383 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Car01g01523 383 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Car01g01523 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Car01g01523 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 383 - -
Car01g01523 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 383 IPR001680 GO:0005515
Car01g01523 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01523 K24770 DSE1, ALT2, EMB2757; protein decreased size exclusion limit 1 - csv:101213197 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01523 Car-Chr1:12845757 Car08g00308 Car-Chr8:1972092 1.01E-08 dispersed
Car01g01523 Car-Chr1:12845757 Car03g00788 Car-Chr3:6546732 8.09E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1053 . . . . . . . . . . Cma01g01949 . Car01g01523 . . . . . . . . . . . . . . . . . . . Cone7ag1864 . . Lsi04g01719 . . . . . . . . . . . Sed01g2508 Cmo01g02010 . . . . . . Cpe02g00090 Bhi09g02120 Tan01g4986 Cmetu02g1305 . Hepe01g1640 Mch11g0142 . Cla05g01896 Cam05g2032 Cec05g2041 Cco05g2097 Clacu05g2024 Cmu05g1904 Cre05g2027 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012184 2 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01523 Car_Chr01 FPKM 7.551357 9.830098 18.555902 20.904009 10.57561 10.759236 11.095994 9.566072 7.466712 7.904855