Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01527 ATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGCCAAGAAAAGCGGAAGACAAGCAGTAA 384 50.26 MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKPRKAEDKQ 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12870661 12872848 + Carg17182-RA Car01g01527 142391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01527 127 Gene3D Glutaredoxin 1 100 - -
Car01g01527 127 PANTHER 39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL 1 126 - -
Car01g01527 127 MobiDBLite consensus disorder prediction 107 127 - -
Car01g01527 127 Pfam 39S ribosomal protein L53/MRP-L53 12 63 IPR019716 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01527 K17434 MRPL53; large subunit ribosomal protein L53 - csv:101217531 234.187
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01527 Car09g00107 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01527 Car-Chr1:12870661 Car09g00107 Car-Chr9:527455 2.61E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1074 . . . . . . . . . . Cma01g01956 Cma09g00122 Car01g01527 . . Cpe06g00081 . . . . . . . . . . . . . . . Cone4ag1958 Cone7ag1871 . . Lsi04g01723 Csa03g04259 Chy04g00436 . . . . . . . . . Sed01g2505 Cmo01g02014 Cmo09g00119 . . . Car09g00107 . Cpe02g00086 Bhi09g02115 Tan01g4992 Cmetu04g0768 . Hepe01g1634 Mch11g0137 . Cla05g01893 Cam05g2027 Cec05g2036 Cco05g2094 Clacu05g2018 Cmu05g1898 Cre05g2022 . . . Cme04g00489
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007650 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01527 Car_Chr01 FPKM 7.337699 8.274922 7.304942 8.258637 10.701589 10.65115 11.976743 10.502989 10.771793 10.141245