Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01531 ATGGGCTCTGTGGATGAGAAGCTCAAAACAATAGGGGGGTTCATTACTAACGCCCCACAGACTAACCTTCTCGACGACATGAAATTGTTGAAGGAAATGCAAGATCAAACTGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCGCTTGTTTCCTTGCCCCATATGGGCAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCCAATCTTCCCTCTCAGTTGATGTGCCAAGTTCATAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAGATGAGTCTTCAACCGGTGAACTCCGAAAAAGATGTCTTCATAGTTCCGGACTTTGGACTACGGCCAAGTAAACATCCAAACGAGTTCTTCTGTAAAACTTTGACTGCCAGTGACACCAGCACTCATGGTGGGTTTTCAGTGCCACGCAGAGCTGCTGAAAAGCTCTTCCCTCCATTGGATTACACAATGCAGCCACCAACTCAGGAGCTCGTTGTCCGTGATTTGCACGACAATACCTGGACTTTTCGCCACATATATCGCGGGCAGCCGAAGCGACACCTTCTCACAACCGGATGGAGTCTATTCGTCGGGGCCAAGAGGCTTAGAGCTGGCGATTCTGTCCTTTTTATCAGGGATGAAAAGTCACAGTTGCTCGTTGGAGTGAGGCGTGCTAACCGGCAACAATCAACGTTGCCATCATCGGTTCTATCTGCTGATAGTATGCACATAGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACAATCTTCTACAACCCCAGAGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATACATGGGAACAATTGTTGGAATTAGCGACTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTCCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGACAAGCAGAACAGGGTTAGTTCATGGGACATAGAAACCCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGCCCATTACACGGTGGGTTCTTGGGAGAAAGTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGCGTTCCTGAAAATGTTTCATATGCGTCAACTTTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGCACCACTTTACAGCAGGACATGATGGGGGGTATGCAGCCAGTAACCAATCCCAAAATGCAGCAGCAGCAGGTTACATCGTCGTCTCCTCCGCATCAAAATCATCATCAGCCAGCTCCTTCGCCATCTACTGATCCCATTAACTCAAATTCATCACCTAAAGCAAATGAACCAGGAAAAGTACAGGATTCGGCGGCCATTGAAAGTGAAGCTCCTACTGGAGCTGAGGCAGATAAGTCGAAATATGAACGTGAAGTTTCAACCTGTCAGTCTAATCCATTGCCGCCGGTTGAATGTGGGGAGGATAAACTCACTGGTAATGAAGTGAATATGCAGACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCATCCTGGCCCATGCAGCCTCAGCTGGAATCACTAATCCAACATCCCCAACCAATTGACATGCCTCAGCCTGAATTTCCCAATTCAAATGGTTTGATTTCATCCATGGATGGCGATGGATGCTTGATTAACCCTACTTGTCTACCTCTTTCTGGTGTAATGAGATCACCAGGGAATCTCTCTATGTTGGGATTGCAAGACTCCTCAACAGTGTTCTCTGAGGCTCTTAATTTTCCTATACCCTCTACAGGTCAAGAGATGTGGGACCCTCTTAGTAATATAAGGTTCTCTTCTCAAACCAATCATCTCGTCTCGTTCTCCCATCCTGATGCATCTAACCTGAACTGTATGGCTAATGCGAATGTTACAAGAGATGTTTCCGATGAGAGCAACAACCAGAGTGGGATATATGGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGACCCTGCTGTTTCGAGTACCATTCTTGATGATTATTGCACACTCAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATCACCTCTGCTAGTTTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCTTGCAATGTGGATTTTGATGAAGGCAATCTTCTGCAGAATGGCTCGTGGAAACAAGTGGTACCGCCCATGAGAACTTACACCAAGGTCCAGAAGGCGGGATCAGTTGGTAGGTCTATTGATGTGACAAGTTTTAAGAACTACGAAGAACTGTGCTCTGCTATAGAGTGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTGCTGCTTATTGGCGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATGAATTGCTCCATATCAGAAGGTGGCCGAGCTTAA 2811 46.57 MGSVDEKLKTIGGFITNAPQTNLLDDMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHMGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVNSEKDVFIVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRANRQQSTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWDIETPESLFIFPSLTSGLKRPLHGGFLGESDWGSLVKRPMLRVPENVSYASTLCSEPLMKMLLRPQLVNLHGTTLQQDMMGGMQPVTNPKMQQQQVTSSSPPHQNHHQPAPSPSTDPINSNSSPKANEPGKVQDSAAIESEAPTGAEADKSKYEREVSTCQSNPLPPVECGEDKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSSWPMQPQLESLIQHPQPIDMPQPEFPNSNGLISSMDGDGCLINPTCLPLSGVMRSPGNLSMLGLQDSSTVFSEALNFPIPSTGQEMWDPLSNIRFSSQTNHLVSFSHPDASNLNCMANANVTRDVSDESNNQSGIYGCSNLEISNGGNTLVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYEELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGMNCSISEGGRA 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12880926 12885328 - Carg17186-RA Car01g01531 142395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01531 936 MobiDBLite consensus disorder prediction 455 544 - -
Car01g01531 936 MobiDBLite consensus disorder prediction 455 505 - -
Car01g01531 936 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Car01g01531 936 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Car01g01531 936 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car01g01531 936 Pfam AUX/IAA family 822 909 IPR033389 -
Car01g01531 936 ProSiteProfiles PB1 domain profile. 822 906 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01531 Car09g00105 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01531 Car-Chr1:12880926 Car05g01348 Car-Chr5:12143560 3.10E-172 dispersed
Car01g01531 Car-Chr1:12880926 Car09g00105 Car-Chr9:519797 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2909 PF02362 B3 3.80E-21 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01531 K14486 - csv:101216825 1721.06