Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01533 ATGACGGCTGGACTTGGAAAATGCAGCAAAATCCGACACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCACGAATATCCGCCAATCGTATCCCCTCGGACGTACCTGCCGGACACGTGGCCGTTTGCGTTGGAACGAGCTGTCGACGGTTCGTCGTCCGGGCAACTTACTTGAACCACCCGGTTTTCAAGAAGCTTTTAGTCGAAGCAGAAGAGGAATACGGGTTTAGCAATTCAGGTCCCTTGGCAATCCCTTGCGACGAATCGGTTTTCGAAGAAGTGATCCGGTTCATCTCTAGATCCGAGCCACCCAACTCGGGGCGGTTCGTGAAATTGGACGATTATCAGAGTTACTGCCATATCGGAATCAGAAACAGAGTCGATTTCTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATCTGGTAA 453 52.32 MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQSYCHIGIRNRVDFWPESRPLLHGLAEKSIW 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12893869 12894321 + Carg17188-RA Car01g01533 142397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01533 150 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
Car01g01533 150 PANTHER SMALL AUXIN-UP RNA-RELATED 6 143 - -
Car01g01533 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 143 IPR003676 GO:0009733
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01533 Car-Chr1:12893869 Car19g00545 Car-Chr19:7003587 1.65E-64 dispersed
Car01g01533 Car-Chr1:12893869 Car12g00393 Car-Chr12:2504595 1.15E-13 wgd
Car01g01533 Car-Chr1:12893869 Car02g00223 Car-Chr2:1451573 2.19E-60 wgd
Car01g01533 Car-Chr1:12893869 Car20g00684 Car-Chr20:3920385 2.03E-50 wgd
Car01g01533 Car-Chr1:12893869 Car05g00245 Car-Chr5:1372761 2.51E-16 wgd
Car01g01533 Car-Chr1:12893869 Car09g00103 Car-Chr9:508985 1.91E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01533 K14488 - csv:101216342 289.271