Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01540 ATGGCACTCTCAACTTCCTTAGCAATAAACGCAGAGAAAAGCAGAAAAATGAAACCCATCAACACTAAACGCAGAAAAAAGCACCAAAACCCACCTCCCTCCCAACCGCCGCCGCCGCAGCCGCCGCCCTCTGCCCAATCTTCATGGGACCAAATCAAGAACCTCATCACTTGCAAGCAGGTGGAGGCTACGAGAGTTCACGAGCCGACAAAACGCTCGCCGGCGAATTCGAAGTTGGGTTCTTCTTGCAGCTCCATTTGTAGGTTTAGAGACGTGGTCCATGGCAACGCCAAAATTGTTCACAGACCCGACAACTCACCGGAAACCAGCTCCCTCGGACAGGAAACTAGGTTACTCACTACAAAAGCTACAAACGGTTCATCGTCTCGTACTTTGACAGCTCCGACCAGAACCAAAAACGGTGCTTCTGCTTCATACTCCTCTTCTCGAGGATTACAATTACGAAAGCTTTCTGGGTGTTATGAATGCCACACCATCGTTGACCCTAGCAGGTATTTTGTATTTTATAACCGCTCAAGCTCAAGCACAATGCTAATTGATATTGTCTTTTATGGACTTTCTCTACGTCTAGATTTGTGGACTTTCTCTACGTCTAGATTTCAACGCCAATTATTATTTAATTATAAATTGAAAAAAGAGTTAAAATTGGAGTTGAATTTCAGGTACCCGATTCCGAGGAGTTCTATTTGCCCTTGTCCTCAATGTGGAGAGATGTTCCCCAAAATTGAAAGCTTAGAGCTTCACCAAGCGGTTCGCCACGCTGTTTCGGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATCATTTTCAAATCAAGCTGGCTAAAAATAGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAAGACTGCCGCGATGCAGTGAAGACACGTGCACTCGCCTGCGCTAGAAAAAACCCGCGGTGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGAGTTGTTGTGTGACCTCGGCTCACGTGGCTCAACCGGCCTGTGTGCCTCGATTCCCGGCTGCCGTGTCTGCAGCGTTATCCGTCATGGATTCCAGTGCAAGCCCGGTGAACCCGCTGGCGTACGAACCACGGCCAGTAGCGGTAGGGCCCATGATTCGTTCGAATGCGGCGATGGACGGCGGCGGGCGATATTGGTGTGCCGTGTCATCGCCGGAAGAGTGAAGCGGATCGCGGAGGATTTGTCGGCCGCAGCGGTGGAGGAGGAGAATTTGTCGGCGGCGGCGGCGGCCTCTTACGACTCCGTTTCACGACAGTCGGGGAAGTATTCGAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTCGTGATCTACGAAGCCCTCCAAACCTAA 1440 50.28 MALSTSLAINAEKSRKMKPINTKRRKKHQNPPPSQPPPPQPPPSAQSSWDQIKNLITCKQVEATRVHEPTKRSPANSKLGSSCSSICRFRDVVHGNAKIVHRPDNSPETSSLGQETRLLTTKATNGSSSRTLTAPTRTKNGASASYSSSRGLQLRKLSGCYECHTIVDPSRYFVFYNRSSSSTMLIDIVFYGLSLRLDLWTFSTSRFQRQLLFNYKLKKELKLELNFRYPIPRSSICPCPQCGEMFPKIESLELHQAVRHAVSELGPDDSGRNIVEIIFKSSWLKIDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALACARKNPRCAADGNELLRFHCSELLCDLGSRGSTGLCASIPGCRVCSVIRHGFQCKPGEPAGVRTTASSGRAHDSFECGDGRRRAILVCRVIAGRVKRIAEDLSAAAVEEENLSAAAAASYDSVSRQSGKYSNLEELIIFNPKAILPCFVVIYEALQT 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12929108 12931082 + Carg17195-RA Car01g01540 142404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01540 479 MobiDBLite consensus disorder prediction 1 48 - -
Car01g01540 479 ProSitePatterns Zinc finger C2H2 type domain signature. 237 260 IPR013087 -
Car01g01540 479 MobiDBLite consensus disorder prediction 31 45 - -
Car01g01540 479 MobiDBLite consensus disorder prediction 119 145 - -
Car01g01540 479 MobiDBLite consensus disorder prediction 62 81 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01540 Car09g00098 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01540 Car-Chr1:12929108 Car04g02261 Car-Chr4:18260093 6.09E-97 dispersed
Car01g01540 Car-Chr1:12929108 Car09g00098 Car-Chr9:476995 3.33E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2910 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01540 - - csv:101222539 592.423