Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01544 AACGGTCATTTTGTTCTTCATCGAACATTGTCGCTTGTTTTCTTGTTTCCTGTTCAGTGGATCGGAATGGGAAAGAGCAATGGATTACAAGTTTCGAATGAACGGCGAAATTGGGGCAAAATCTTCAGTGCTCTTACTCAAATGCTACAGACCCAGCAAAATCAGCTCGAAACACTCGTCAAGGAGCGAAAACTTCTTGAAGATCGTGTTAAAATGCAGCACGAACGATGGGTCGCTGATATTCGTCTCTACGACGACCATATCTCTCAGATCAAGAACGATTTGTTTGTGCAAGATATGGAACGCGCACTTCAAGCTTCGAAATCAGATCTGCTCACTGGATTGAAGCAGATGGAGGTCTATCTCTACCGACTGAAAATAGAACATTCAGAAGCTGAGTTGGACGATTTCAAATCTTTTTTTGATGATCTCCTCTTTCATAAAAGCTCCAGTCCACAAGAAACTTCTTTGAGAAGTTCATCAGAAGCAGGCGAGGCAAATGGTAGAATAGAAGGTGTTTTGTTGTCAGCATGTGGAAATACCGATGAAGAAAGACGTTCTAAGGCATTGGAAGGTGAAGTAAGGAGGTTGAGGAGTGAGTACGAAAAGCTTGCCTCAGAAAAGAGGTCTGAGGTGACTGCGCTAGTAACTGAGAAGAAATTCTTATGGAACCAATATAATATTATGGAAAATGATTGCACAACACAATTGAAGAGCAAGCAGTCAGAACTTGAACTTGCAAACCAAAAGATAGAGAAACTTCTAGCCTCATTGGAAGAATTACAAAGTTCAAGCAACGAGAAGGATGGCATTATTGCAATGCTACGAACTCAAGTGGGGAAGATGGAAACTGACTCGAGTAAACTAAAACACGAAATTTCCCGACTCTCCCGTGACTTAGAACTGCAAAGGAAGTCTTTTAATGCTAATGCTACACCCGTGCTGAACCCATGCAACAAGGCAGGAACTAAGGCATTTAGCTCAGGAGCCAAAAACGGCACAAAGAACAGAAGTAACGTCATTGTCAACAAAGTCATGCTTTCGGCGCAACCTTCTCATTCAGGAAACCAAAAGAGAAGAAGAGGTGATGCTAAGTCGGATCCTGAGACTCCAAGGTTGTTTACCTCTAATTTCAAAGTACCCAAACTGAAGAACGAAATCAAGTTGTAG 1170 41.97 NGHFVLHRTLSLVFLFPVQWIGMGKSNGLQVSNERRNWGKIFSALTQMLQTQQNQLETLVKERKLLEDRVKMQHERWVADIRLYDDHISQIKNDLFVQDMERALQASKSDLLTGLKQMEVYLYRLKIEHSEAELDDFKSFFDDLLFHKSSSPQETSLRSSSEAGEANGRIEGVLLSACGNTDEERRSKALEGEVRRLRSEYEKLASEKRSEVTALVTEKKFLWNQYNIMENDCTTQLKSKQSELELANQKIEKLLASLEELQSSSNEKDGIIAMLRTQVGKMETDSSKLKHEISRLSRDLELQRKSFNANATPVLNPCNKAGTKAFSSGAKNGTKNRSNVIVNKVMLSAQPSHSGNQKRRRGDAKSDPETPRLFTSNFKVPKLKNEIKL 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12942907 12945535 + Carg17199-RA Car01g01544 142408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01544 389 Coils Coil 180 207 - -
Car01g01544 389 Coils Coil 237 264 - -
Car01g01544 389 Coils Coil 42 76 - -
Car01g01544 389 MobiDBLite consensus disorder prediction 347 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01544 - - - mcha:111005003 489.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01544 Car05g00254 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01544 Car-Chr1:12942907 Car09g00090 Car-Chr9:452292 4.14E-10 dispersed
Car01g01544 Car-Chr1:12942907 Car05g00254 Car-Chr5:1418020 2.10E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1111 . . . . . . . . Cmo05g00309 . Cma01g01973 . Car01g01544 . Sed11g1087 . . Bhi04g00148 Tan02g2076 Cmetu03g0470 . Hepe10g0153 . Lcy13g1911 Cla08g01421 Cam08g1901 Cec08g1478 Cco08g1611 Clacu08g1592 . Cre08g1377 . . Cone17ag1404 Cone20ag0078 Lsi04g01747 Csa03g04282 Chy04g00415 Cme03g01880 . . Bda08g01219 . . Bpe05g00140 . Bma05g00165 Sed13g1568 Cmo01g02031 . . Cma05g00306 Car05g00254 . Cpe11g00255 Cpe02g00069 Bhi09g02085 Tan01g5020 Cmetu04g2273 . Hepe01g1612 Mch11g0114 . Cla05g01868 Cam05g1997 Cec05g2009 Cco05g2067 Clacu05g1989 Cmu05g1870 Cre05g1994 Lsi08g01317 Csa02g02134 Chy03g01385 Cme04g00466
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002757 1 4 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01544 Car_Chr01 FPKM 27.403835 29.105316 24.842159 25.328747 15.889883 16.478746 15.805905 41.009056 37.496521 40.114601