Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01547 ATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTCCCAAAGAAACAACCCTCTCTGGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGA 417 47.96 MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12949296 12952735 - Carg17202-RA Car01g01547 142411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01547 138 Pfam Brain and reproductive organ-expressed protein (BRE) 3 87 IPR010358 GO:0070531|GO:0070552
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01547 K12173 BRE, BRCC45; BRCA1-A complex subunit BRE - csv:101214619 269.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01547 Car09g00091 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01547 Car-Chr1:12949296 Car09g00092 Car-Chr9:459067 5.19E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1120 Blo01g01600 . Bda01g00481 . Bpe02g00345 . . Bma01g02370 . . Cma01g01976 . Car01g01547 . . Cpe06g00065 . . . . . . . . . . . . . . . Cone4ag1973 Cone7ag1890 . . Lsi04g01750 Csa03g04285 Chy04g00412 . . . . . . . . . Sed13g1566 Cmo01g02034 . . . . Car09g00091 . Cpe02g00067 Bhi09g02082 Tan01g5023 Cmetu04g1950 . Hepe01g1610 Mch11g0111 . Cla05g01865 Cam05g1994 Cec05g2006 Cco05g2064 Clacu05g1986 Cmu05g1867 Cre05g1991 . . . Cme04g00463
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025622 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01547 Car_Chr01 FPKM 1.219973 1.589591 1.151634 1.26084 1.683046 1.398864 1.744444 1.456156 1.933458 2.537311