Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01550 | ATGGCTACCCAAATTTCATTCATATTATGTCTCCTGACTTTCCAAATTTTAATCTCAGGTGTATTGTCCACCACTTTCAGCATCGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTTACAAACGCCGGAGTTTCACCCCTTCCGACAACCGGCTTCGTCCTCGCCGCCGGCGAGTCTCAAACTATCTCCGCTCCCGCGTCTTGGGGCGGTCGGTTCTGGGGCCGAACTCACTGCTCCCAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGACTGTGGCTCTGACAAGGTTGAGTGCAGTGGAAACGGTGCTAAGCCGCCGGCAACTCTGGCGGAGTTCACCCTTGACGGCGCCGGCGGGCTGGATTTCTTCGACGTGAGTTTGGTTGACGGTTACAACATCCCTATGCTCGTGGTCCCACAGGGTGGTACCGGCGAGAAGTGCGCGAGCACGGGATGTGTGGTGGATTTGAACGGCGCGTGTCCTTCAGAGCTCAAGCTTACGAGCGTGGACGACGGAAAGAGCATCGCTTGTAAAAGCGCGTGTGAAGCTTTTAACCAACCACAATTCTGTTGTAGTGGCGCTCAGAAATCAACGGAAACTCACAACACAAACACGCCAGTGATCAATGGCGGCAATGGCACAATGGTTTACGAAGGGGCTGCGTTTGATCTAAGCAGCGCGTCGAGAACAACGCTCCGCCATATTCTAGGCGTAGTTGTTGCCACGGTGGCAGTCCTTCAAATGTGGCAACTGTTTTGA | 771 | 53.05 | MATQISFILCLLTFQILISGVLSTTFSIVNKCDYTVWPGILTNAGVSPLPTTGFVLAAGESQTISAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCASTGCVVDLNGACPSELKLTSVDDGKSIACKSACEAFNQPQFCCSGAQKSTETHNTNTPVINGGNGTMVYEGAAFDLSSASRTTLRHILGVVVATVAVLQMWQLF | 256 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12961740 | 12963326 | + | Carg17205-RA | Car01g01550 | 142414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01550 | 256 | ProSiteProfiles | Thaumatin family profile. | 23 | 203 | IPR001938 | - | |
| Car01g01550 | 256 | Pfam | Thaumatin family | 30 | 205 | IPR001938 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01550 | Car-Chr1:12961740 | Car05g00260 | Car-Chr5:1448604 | 5.49E-67 | dispersed | |
| Car01g01550 | Car-Chr1:12961740 | Car12g00381 | Car-Chr12:2434079 | 1.11E-61 | wgd | |
| Car01g01550 | Car-Chr1:12961740 | Car16g01168 | Car-Chr16:9936919 | 3.91E-74 | wgd | |
| Car01g01550 | Car-Chr1:12961740 | Car20g00665 | Car-Chr20:3747654 | 1.83E-65 | wgd | |
| Car01g01550 | Car-Chr1:12961740 | Car03g00627 | Car-Chr3:5720392 | 7.76E-68 | wgd | |
| Car01g01550 | Car-Chr1:12961740 | Car05g00259 | Car-Chr5:1442406 | 6.80E-103 | wgd | |
| Car01g01550 | Car-Chr1:12961740 | Car07g00370 | Car-Chr7:1850908 | 3.96E-66 | wgd | |
| Car01g01550 | Car-Chr1:12961740 | Car09g00086 | Car-Chr9:437417 | 1.23E-161 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01550 | - | - | csv:101214136 | 424.861 |