Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01552 ATGAGGAAGAAATCGCTCAATCCTCTTGTTTGCAACTTCTTTATGTTCTTCTGTTTACTTCTTTTCTCTGCCCGTTTTTGCTTCGCCAATCGGGATATGGAAGCGCTGTTGAAAATGAAGAATGCCTTGATTGCACCAGGGAGATCGGGGCTTACTGATTGGCAACCGTCGTCTTCGCCGTCTGCTCATTGCGCCTTCTCTGGAGTTTCGTGCGATGTTGATTCAAGAGTTGTTGCGCTTAACATCTCGAATTTCCGTCTGTTTGGCAGGATTTCGCCGGCGATTGGGATGTTGGAAAAGCTTGTGAACTTGACATTAGTGAATGACAATCTCACTGGAGTGATTCCTTTCGAAATGGCGAAACTCACGTCGCTTAAGACTCTGAACCTCTCTAATAACTTATTCCGGGATAGATTGCCGGCGGAAATCACGCTCGGAATGATGGAACTCGAGGTTTTCGATGTCTATAACAACAATTTCTCTGGTATGCTTCCGGTGGAGTTCGTCAAGCTGAAGAAGCTTAAGTATCTAGATCTCGGCGGTAACTTCTTTACCGGTCAGATTCCGGAGGCTTACTCTGAGATGGAGATGCTTGAGTTTTTGAGCTTGAGGGGAAATGCGCTTTCCGGGAGACTCCCGGCGAGTTTGGCTCGTTTGAAGAATCTTACGCATCTTTACGCTGGATATTATAACCATTACGACGGCGGGATTCCGGCTGTGTTTGGAACGTTGAGTGCTCTCGAGCTTCTCGATTTAGGGAACTGTAATCTCTCCGGTGAAATTCCACCGAGTTTGGGGAATTTGAAGGTCTTGCACTCTCTATTTCTACAAGTAAACAATCTAACGGGTCGGATTCCTCCCGAACTTTCCGGTTTAGTTAGCCTCAAATCGCTGGACCTCTCACTGAACGAACTCACTGGCGAGATACCGGCGGGTTTCGTGGCGCTGCAGAAAATTACACTTCTCAATTTATTCGGCAACAAACTCCACGGTCCAATTCCTGGTTTCGTCGGTGATTTTCCGCATCTTGAAGTGCTTCAGTTGTGGAATAACAACTTCACGCTCGAGCTTCCAGCGAATCTGGGGCGTAATGGTAAACTATTTCTGCTTGACGTGGCTACAAATCATCTAACTGGACTCATACCTCCGAATTTATGTAATGGTAGATTGAAGACTTTGATTCTGTTGGATAATTACTTCTTTGGGCCCATCCCTGAGGAATTAGGACGGTGTGATTCGCTTAAGAAAATAAGAATTGCTGGAAACTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCATTGGAACTACTCGATATTAGTAACAATTACTTCTCTGGCACTCTTCCGTCGCGAATGTCAGGCGAGTTTCTTGGAAGTCTGCAGCTCAGTAACAACCATATCACAGGGGAAATTCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTCTTTCCCTGGAACATAACCAATTCACCGGAAATTTACCTGTGGAAATATTTGAATTGAATAAGTTGCTTAGAATCAACACCAGCTTCAACAACATTAGCGGCAAAATTCCGCATTCGCTCGTTCAGTGCACGTCTTTAACATCAATTGATCTCAGTGAAAACTACCTTGTTGGCCAAATTCCCAAAGGAATTTCGGATCTGAAAATCTTGAGCGTTCTCAATTTGTCAAGTAATCAACTGACGGGCCAAATTCCGAATGAAATTCGGTCGATGATGAGTCTTACAACTCTTGATTTGTCCTACAACAATTTCATCGGTAGAATTCCCACCGGCGGTCAGTTTTCAGTATTCAACGGCAGCGCATTCGTCGGAAATCCAAACCTCTGTTCCCCTAACGATGGCCCTTGCGCATCGCTACACAGTAACACGAAATCCATTAAGCTAATCCTCCCTATTGTTGCGGTATTCATCGTTTTGTTATGCGTACTCGCTGGAGTTTACATCAGGAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACGGCGTTCCAACGCCTCGATTTCAAAGCGGAAGACGTCCTAGAATGCTTGAAGGAGGAAAATATCATCGGCAAAGGTGGTGCCGGGGTCGTCTACCGTGGATCTATGCCGGACGGCTCCATCGTGGCGATCAAACTGTTGCTAGGAAGTGGCCGGAACGACTATGGTTTCTCTGCCGAAATTCAGACCTTGGGGCGGATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAAAGACACGAATCTGCTGCTGTACGAGTACATGCCAAATGGGAGCTTGGACCAAAGGCTGCATGGAGCGAAGGGCGGGCATTTTCACTGGGACTTGCGGTACAAGATCGCGATGGAAGCCGCCAAGGGGCTCTGTTACCTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATACTGCTGGATAAGTTCTTCGAGGCACATGTCTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTATGGCTACATCGCTCCAGAATACGCCTACACGCTGAAAGTGGACGAGAAGAGCGACGTGTACAGTTTCGGCGTGGTGCTGTTAGAGCTGATAGCCGGGAGGAAGCCAGTGGGAGATTTTGGCGAAGGCGTGGACATAGTAAGGTGGGTCCAGAAAACCATATCAGAACTGTCTCAGCCGTCGGATGCAGCGTCAGTGTTAGCCGTGGTGGACTCGCGGCTGACCGAATACCCTCTCCAAGGCGTGATCCACCTCTTCAAAATAGCGATGATGTGCGTTGAAGAAGACAGCTCCGCAAGGCCTACCATGAGGGAAGTGGTCAAAATGCTCTCGAATCCGCCAAGGTCTGCCCCTGCTCTCATCAACCTCTAA 2919 47.76 MRKKSLNPLVCNFFMFFCLLLFSARFCFANRDMEALLKMKNALIAPGRSGLTDWQPSSSPSAHCAFSGVSCDVDSRVVALNISNFRLFGRISPAIGMLEKLVNLTLVNDNLTGVIPFEMAKLTSLKTLNLSNNLFRDRLPAEITLGMMELEVFDVYNNNFSGMLPVEFVKLKKLKYLDLGGNFFTGQIPEAYSEMEMLEFLSLRGNALSGRLPASLARLKNLTHLYAGYYNHYDGGIPAVFGTLSALELLDLGNCNLSGEIPPSLGNLKVLHSLFLQVNNLTGRIPPELSGLVSLKSLDLSLNELTGEIPAGFVALQKITLLNLFGNKLHGPIPGFVGDFPHLEVLQLWNNNFTLELPANLGRNGKLFLLDVATNHLTGLIPPNLCNGRLKTLILLDNYFFGPIPEELGRCDSLKKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGTLPSRMSGEFLGSLQLSNNHITGEIPAAIKNLKNLQVLSLEHNQFTGNLPVEIFELNKLLRINTSFNNISGKIPHSLVQCTSLTSIDLSENYLVGQIPKGISDLKILSVLNLSSNQLTGQIPNEIRSMMSLTTLDLSYNNFIGRIPTGGQFSVFNGSAFVGNPNLCSPNDGPCASLHSNTKSIKLILPIVAVFIVLLCVLAGVYIRKRKRIQKSKAWKLTAFQRLDFKAEDVLECLKEENIIGKGGAGVVYRGSMPDGSIVAIKLLLGSGRNDYGFSAEIQTLGRIKHRNIVRLLGYVSNKDTNLLLYEYMPNGSLDQRLHGAKGGHFHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKFFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVQKTISELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVKMLSNPPRSAPALINL 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12971729 12975221 - Carg17207-RA Car01g01552 142416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01552 972 Pfam Leucine Rich Repeat 247 268 IPR001611 GO:0005515
Car01g01552 972 Pfam Protein kinase domain 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01552 972 ProSiteProfiles Protein kinase domain profile. 686 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01552 972 Pfam Leucine Rich repeat 294 308 IPR001611 GO:0005515
Car01g01552 972 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Car01g01552 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Car01g01552 972 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Car01g01552 972 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01552 Car09g00084 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01552 Car-Chr1:12971729 Car07g00534 Car-Chr7:2714563 0 dispersed
Car01g01552 Car-Chr1:12971729 Car09g00084 Car-Chr9:426464 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88614 PF00069 Pkinase 2.60E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01552 K00924 - csv:101221360 1642.86