Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01554 ATGTTATCGATCGGAATTGAAGACGAAGAGAAATGGCTGGCGGAAGGAATCGCCGGCATTCAACACAATGCCTTCTACATGCACCAAGCCGTGGACGCGAACAATCTCAGAGAAGCGCTCAAATACTCGGCTCAGATGCTTTCGGAGCTTCGAACTTCGAAGCTTTCACCGCATAGATATTATGAACTCTATATGCGAGCCTTTGATGAATTGAGGATGTTGGAGATCTTTTTCAAGGATGAAAGTAGGCATGGCGTAATGGTTGTTGATCTGTATGAACTCGTGCAACACGCCGGGAACCTATTGCCCAGATTGTATCTCCTCTGTACCGTTGGCTCGGTTTACATGAAAACTAAGGAGGTCCCAGCGAAAGAGGTCCTCAAAGATCTTGTAGAAATGTGTCGTGGGGTTCAACATCCAATACGTGGTCTCTTTCTCAGAAACTATCTAGCCCAAGTCAGTAGGGACATATTGCTCGATATCAATTCTGAGTGCGAAGGAGATGCTGACACTGTTATGGAGGCTGTAGAATTCGTGCTACAGAATTTTACTGAAATGAATAAACTTTGGGTGCGAATACAGCTTCAGGGACCTGCTCATTTGAGAGAGAAGCAGGAAAAAGAAAGAACCGAACTCCGCGATCTTGTAATATTTCTGATTATTGTGAGAACTCTGCATAGATTACTTCAAGAGATTATTCCTTTCTCTTGTATTGCTGATCCAGGAAAGAATCTCCATGTTCTCAGTCAGATAGAGGGTGTGGACCTTGAAATGTACAAGCAGTCCGTTTTACCTAGAGTCTTGGAGCAGGTGTTTCCAGACGAATATCATTTGCAGACACTTGAGACATTGTTGGGTGTTTGCCCGCAGCTTCAGGCAACCGTTGACATCCGGATGGTTCTATCTCAATTAATGGATAGACTATCAAACTATGCTGCGTCAAATGCAGATGTAATACCTGATTTTCTGCATGTAGAAGCCTTTGCTAAGTTGAGCAATGCCATTGGGAAGGTAATTGAAGCACAGGTTGACATGCCTATTGTTGGCGCTATAACATTGTATGTCTCCCTTCTGACATTTACCCTTCGTGTTCATCCAGATCGGCTTGACTATGTGGACCAAATATTGGGAGCATGCGTTAAGACACTTTCCAGCCAACCAAAGCTTGAAGATACTAGAGCAACAAAACAAATAGTTATACTTCTCAGTGCTCCATTAGAGAAGTATAATGATATTGTGACGGCTCTTACACTCTCAAATTATCCTCGTGTCATGGACCACCTGGACAATGCCACAAACAAAGTTATGGCCATGGTCATCATTCAAAGTATAATGAATAGTAACTCTTGCATTTCCACTGCTGATAAGGTTGACGTTTTGTTTGAACTAATAAAAGGGCTTATCAAGGACTTGGAAGAAATTACTGTTGATGAGCTTGACGAAGAGGATTTCAAGGAAGAGCAAAATTCTGTTGCCCGCCTCCTACACATGCTACATAATGATGATCCACTTGAAATGTTAAAGATTATTTGTGCTGTGAAGAAACACATTTTGTGTGGAGGACCAAGTCGCCTTCCTTTCACTGTTCCTCCCCTGATATTTTCTGCGCTCAGTTTAATTAGACGGTTGCAAAATCAAGATAGGGATGTTGTGGGAGAAGAGCAAAGCGAAGCTGGGGATGTGGTAGAAGAAATGCATGCTACACCAAAGAAAATATTTCAGCTTTTAAATCAGCTTATTGAGGCTCTTTCCTCTGTTCCAGCTCCTGAACTGGCATTGAGGTTATACATGGAATGTGCTGAGGCAGCTAATGACTGTGATCTTGAGCCTGTTGCATACGAGTTTTTTACTCAAGCATTTATAATCTATGAAGAGGATATTGCGGATTCTAAGGCTCAAGTGACTGCAATACATCTCATTATTGGGACTCTCCAGAAGATGAATGTGTTTGGCATTGAAAACAGAGATACTTTGACACACAAAGCTACTGGGTACTCTGCAAAGCTCCTAAAGAAACCTGATCAGTGTAAGGCTGTTTATGCATGCTCACATCTCTTTTGGGTTGATGATCCAGAAGGCATTAAGGATGGAGAGAGAGTTCTTCTTTGCCTGAAGCGTGCCTTAAGAATTGCAAATGCTGCTCAACAGATGGCTAATGTTACACGGGGTAGCGGTGGACCCATCACACTTTTTGTTGAAATACTGAACAAGTACCTGCACTATTTCGAGAAAGGAAACCAGCAGATTACAAATGCTGCAATTCAAGGGTTGATTGAATTAATAAGAACTGAATTGCCGACCGACACCCCGAGCGCCAATCCTCCGTCAGATGCTTTCTTTACCAGCACACTTCGGTACATTCAGTTCCAGAAACAGAAAGGTGGTGTGATGGGTGAAAGATATGACTCTATCAAGGTTTGA 2421 42.63 MLSIGIEDEEKWLAEGIAGIQHNAFYMHQAVDANNLREALKYSAQMLSELRTSKLSPHRYYELYMRAFDELRMLEIFFKDESRHGVMVVDLYELVQHAGNLLPRLYLLCTVGSVYMKTKEVPAKEVLKDLVEMCRGVQHPIRGLFLRNYLAQVSRDILLDINSECEGDADTVMEAVEFVLQNFTEMNKLWVRIQLQGPAHLREKQEKERTELRDLVIFLIIVRTLHRLLQEIIPFSCIADPGKNLHVLSQIEGVDLEMYKQSVLPRVLEQVFPDEYHLQTLETLLGVCPQLQATVDIRMVLSQLMDRLSNYAASNADVIPDFLHVEAFAKLSNAIGKVIEAQVDMPIVGAITLYVSLLTFTLRVHPDRLDYVDQILGACVKTLSSQPKLEDTRATKQIVILLSAPLEKYNDIVTALTLSNYPRVMDHLDNATNKVMAMVIIQSIMNSNSCISTADKVDVLFELIKGLIKDLEEITVDELDEEDFKEEQNSVARLLHMLHNDDPLEMLKIICAVKKHILCGGPSRLPFTVPPLIFSALSLIRRLQNQDRDVVGEEQSEAGDVVEEMHATPKKIFQLLNQLIEALSSVPAPELALRLYMECAEAANDCDLEPVAYEFFTQAFIIYEEDIADSKAQVTAIHLIIGTLQKMNVFGIENRDTLTHKATGYSAKLLKKPDQCKAVYACSHLFWVDDPEGIKDGERVLLCLKRALRIANAAQQMANVTRGSGGPITLFVEILNKYLHYFEKGNQQITNAAIQGLIELIRTELPTDTPSANPPSDAFFTSTLRYIQFQKQKGGVMGERYDSIKV 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12979446 12988396 + Carg17209-RA Car01g01554 142418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01554 806 Pfam Vacuolar protein sorting-associated protein 35 242 763 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car01g01554 806 Pfam Vacuolar protein sorting-associated protein 35 12 216 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car01g01554 806 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 5 216 - -
Car01g01554 806 Gene3D - 472 791 IPR042491 -
Car01g01554 806 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 242 806 - -
Car01g01554 806 PANTHER VACUOLAR SORTING PROTEIN 35 5 216 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car01g01554 806 PANTHER VACUOLAR SORTING PROTEIN 35 242 806 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car01g01554 806 PIRSF Retromer_Vps35 3 806 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01554 K18468 VPS35; vacuolar protein sorting-associated protein 35 - csv:101213893 1420.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01554 Car09g00081 CCT
Car01g01554 Car09g00081 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01554 Car-Chr1:12979446 Car06g00104 Car-Chr6:689614 0 dispersed
Car01g01554 Car-Chr1:12979446 Car16g01177 Car-Chr16:9989730 0 wgd
Car01g01554 Car-Chr1:12979446 Car09g00081 Car-Chr9:408759 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1148 Blo01g01607 . Bda01g00474 . . . . Bma01g02380 . . Cma01g01983 Cma09g00094 Car01g01554 . . Cpe06g00056 . . . . . . . . . . . . . . . . . . . . Csa03g04293 Chy04g00403 . . . . . . . . . Sed01g2488 Cmo01g02041 Cmo09g00091 . . . Car09g00081 . Cpe02g00062 Bhi09g02073 Tan01g5039 Cmetu04g2094 . Hepe01g1603 Mch11g0102 . . . . . . . . . . . Cme04g00456
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001755 3 3 2 3 2 2 4 2 2 2 1 1 4 2 1 3 1 2 4 2 2 2 2 2 2 1 2 4 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g01554 Car_Chr01 FPKM 6.425897 4.195906 11.543077 14.604906 8.018477 6.613175 9.15718 4.507536 5.976942 5.035945