Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01564 ATGAACTATTTGCACCAAAAGAATATCATCCATAGAGATCTGAAAGCTGCAAATCTTTTGTTGGACGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCCAGAGTGCAATCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCATAAAGCTGATGTTTACAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGGCAGCTGCCTTATGATAACCTGACTCCGTTACAAGCAGCAATGGGCGTGATCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCAAATCCAATGATCGTGGACTTGCTTGAGAGATGCTGGCGGCAGGATCCATCTTTGAGACCTGAATTTTCTGAAGTTACGAAACTTTTGCAGCAAGCCCTCAAGGAGATTACATAA 450 44.89 MNYLHQKNIIHRDLKAANLLLDEDGVVKVADFGVARVQSQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYDNLTPLQAAMGVIQKGLRPKIPRHANPMIVDLLERCWRQDPSLRPEFSEVTKLLQQALKEIT 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13026120 13028587 + Carg21391-RA Car01g01564 142428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01564 149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Car01g01564 149 ProSiteProfiles Protein kinase domain profile. 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01564 149 Pfam Protein tyrosine and serine/threonine kinase 1 140 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01564 Car04g02350 CCT
Car01g01564 Car15g00559 CCT
Car01g01564 Car15g00559 ECH
Car01g01564 Car04g02350 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01564 Car-Chr1:13026120 Car06g00116 Car-Chr6:746325 3.38E-79 dispersed
Car09g00309 Car-Chr9:1711430 Car01g01564 Car-Chr1:13026120 1.28E-19 transposed
Car01g01564 Car-Chr1:13026120 Car11g01389 Car-Chr11:11360686 5.43E-84 wgd
Car01g01564 Car-Chr1:13026120 Car16g01190 Car-Chr16:10064463 5.49E-81 wgd
Car01g01564 Car-Chr1:13026120 Car19g00592 Car-Chr19:7307944 2.51E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88616 PF07714 PK_Tyr_Ser-Thr 9.00E-44 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01564 - - cpep:111789352 300.056