Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01565 ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATAGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGGTGACAACCTTTCACATTCCTTGCTTTTCTTCGTGGGGTCAATTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGGCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACATGGAGAGTAA 1011 46.69 MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13029978 13032189 - Carg21390-RA Car01g01565 142429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01565 336 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 249 316 IPR009071 -
Car01g01565 336 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Car01g01565 336 Pfam HMG (high mobility group) box 249 316 IPR009071 -
Car01g01565 336 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Car01g01565 336 Coils Coil 305 332 - -
Car01g01565 336 MobiDBLite consensus disorder prediction 209 255 - -
Car01g01565 336 MobiDBLite consensus disorder prediction 230 247 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01565 Car09g00069 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01565 Car-Chr1:13029978 Car17g00085 Car-Chr17:496148 2.04E-80 dispersed
Car01g01565 Car-Chr1:13029978 Car09g00069 Car-Chr9:345113 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2911 PF01388 ARID 6.40E-18 CL0123 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01565 - - csv:101219101 552.362